Mm00435501_m1 Best Coverage

• Gene Symbol: Pax5
• Gene Name: paired box 5
• Gene Aliases: BSAP, EBB-1, KLP, Pax-5
• Chromosome Location: Chr.4: 44526269 - 44710481 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Pax5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_008782.2	NP_032808.1	8 - 9	1041		59
GenBank mRNA	M97013.1	-	8 - 9	1041		59

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0400002562.mm.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Recommended Assay, Mus musculus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Pax5

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
multicellular organism development
spermatogenesis
nervous system development
aging
organ morphogenesis
lateral ventricle development
cerebral cortex development
cell differentiation
adult behavior
skeletal muscle cell differentiation
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
embryonic cranial skeleton morphogenesis
negative regulation of histone H3-K9 methylation

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0400020920.mm.1	TC0400002562.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0400020920.mm.1	NM_008782.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0400020920.mm.1	NM_008782.2	Refseq