Mm00437297_m1 Best Coverage

• Gene Symbol: Vdr
• Gene Name: vitamin D receptor
• Gene Aliases: Nr1i1
• Chromosome Location: Chr.15: 97854427 - 97908296 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Vdr
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_009504.4	NP_033530.2	3 - 4	289		95
GenBank mRNA	AK030339.1	-	3 - 4	290		95
	AK154647.1	-	3 - 4	264		95
	AK156789.1	-	3 - 4	305		95
	BC006716.1	-	3 - 4	255	3710866	95
	CT010294.1	-	1 - 2	149		95
	D31969.1	-	3 - 4	257		95

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1500002159.mm.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Nuclear Receptor, Mammalian Gene Collection, Recommended Assay, Mus musculus, Mouse Estrogen Panel, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Vdr

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
cell morphogenesis
skeletal system development
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
calcium ion transport
cellular calcium ion homeostasis
multicellular organism development
lactation
negative regulation of cell proliferation
organ morphogenesis
positive regulation of gene expression
negative regulation of keratinocyte proliferation
positive regulation of vitamin D 24-hydroxylase activity
intracellular receptor signaling pathway
bile acid signaling pathway
steroid hormone mediated signaling pathway
positive regulation of keratinocyte differentiation
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
intestinal absorption
regulation of calcium ion transport
positive regulation of apoptotic process involved in mammary gland involution
regulation of calcidiol 1-monooxygenase activity
mammary gland branching involved in pregnancy
vitamin D receptor signaling pathway
apoptotic signaling pathway

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
steroid hormone receptor activity
RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding
vitamin D binding
protein binding
zinc ion binding
calcitriol receptor activity
lithocholic acid receptor activity
sequence-specific DNA binding
metal ion binding
retinoid X receptor binding
vitamin D response element binding
calcitriol binding
lithocholic acid binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR1500017439.mm.1	NM_009504.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1500017439.mm.1	NM_009504.4	Refseq
Affymetrix Mouse Clariom S Array	PSR1500017439.mm.1	TC1500002159.mm.1	MTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	888897	-	-