Mm00440387_m1 Best Coverage

• Gene Symbol: Myod1
• Gene Name: myogenic differentiation 1
• Gene Aliases: AI503393, MYF3, MyoD, Myod-1, bHLHc1
• Chromosome Location: Chr.7: 46376474 - 46379092 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Myod1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_010866.2	NP_034996.2	1 - 2	830		86
GenBank mRNA	AK076157.1	-	1 - 2	831		86
	AK142859.1	-	1 - 2	832		86
	BC103613.1	-	1 - 2	764	40046317	86
	BC103618.1	-	1 - 2	764	40046319	86
	BC103619.1	-	1 - 2	764	40046318	86
	M18779.1	-	1 - 2	790		86
	M84918.1	-	1 - 2	822		86

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0700000873.mm.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Mammalian Gene Collection, Recommended Assay, Mus musculus, Mouse Stem Cell Pluripotency, 1700, Inventoried, Mouse_Stem_Cell, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Myod1

Panther Classification:

Molecular Function -

basic helix-loop-helix transcription factor

Gene Ontology Categories:

Process(es)

regulation of alternative mRNA splicing, via spliceosome
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
multicellular organism development
muscle organ development
myoblast fate determination
skeletal muscle tissue development
myoblast fusion
cellular response to starvation
myotube differentiation
myotube cell development
myotube differentiation involved in skeletal muscle regeneration
cell differentiation
skeletal muscle cell differentiation
skeletal muscle tissue regeneration
positive regulation of skeletal muscle tissue regeneration
regulation of RNA splicing
skeletal muscle fiber adaptation
histone H3 acetylation
histone H4 acetylation
myoblast differentiation
positive regulation of myoblast differentiation
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
skeletal muscle fiber development
positive regulation of skeletal muscle fiber development
striated muscle cell differentiation
positive regulation of muscle cell differentiation
cardiac muscle cell differentiation
cellular response to glucocorticoid stimulus
cellular response to estradiol stimulus
cellular response to oxygen levels
positive regulation of myoblast fusion
negative regulation of myoblast proliferation

Function(s)

RNA polymerase II regulatory region sequence-specific DNA binding
RNA polymerase II core promoter proximal region sequence-specific DNA binding
core promoter binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
protein binding
transcription factor binding
enzyme binding
chromatin DNA binding
ubiquitin protein ligase binding
nuclear hormone receptor binding
sequence-specific DNA binding
protein heterodimerization activity
protein dimerization activity
E-box binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0700007844.mm.1	TC0700000873.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0700007844.mm.1	NM_010866.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0700007844.mm.1	NM_010866.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0700007842.mm.1	TC0700000873.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0700007842.mm.1	NM_010866.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0700007842.mm.1	NM_010866.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0700007843.mm.1	TC0700000873.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0700007843.mm.1	NM_010866.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0700007843.mm.1	NM_010866.2	Refseq

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	847317	-	-