Mm00443103_m1

• Gene Symbol: Rora
• Gene Name: RAR-related orphan receptor alpha
• Gene Aliases: 9530021D13Rik, Nr1f1, ROR1, ROR2, ROR3, nmf267, sg, staggerer, tmgc26
• Chromosome Location: Chr.9: 68653402 - 69388246 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Rora
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001289916.1	NP_001276845.1	2 - 3	296		76
	NM_013646.2	NP_038674.1	3 - 4	305		76
GenBank mRNA	AK149294.1	-	2 - 3	186		76
	AK155827.1	-	2 - 3	247		76
	BC003757.1	-	2 - 3	245	3592667	76
	S82720.1	-	2 - 3	222		76
	U53228.1	-	3 - 4	289		76
	Y08640.1	-	2 - 3	454		76

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0900000892.mm.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Nuclear Receptor, Mammalian Gene Collection, Mus musculus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Rora

Panther Classification:

Molecular Function -

C4 zinc finger nuclear receptor

Gene Ontology Categories:

Process(es)

angiogenesis
transcription, DNA-templated
regulation of transcription, DNA-templated
xenobiotic metabolic process
nitric oxide biosynthetic process
regulation of smoothened signaling pathway
positive regulation of vascular endothelial growth factor production
regulation of glucose metabolic process
regulation of steroid metabolic process
cerebellar Purkinje cell differentiation
cerebellar granule cell precursor proliferation
intracellular receptor signaling pathway
circadian regulation of gene expression
cellular response to sterol
muscle cell differentiation
regulation of circadian rhythm
positive regulation of circadian rhythm
regulation of macrophage activation
negative regulation of I-kappaB kinase/NF-kappaB signaling
steroid hormone mediated signaling pathway
negative regulation of fat cell differentiation
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
cGMP metabolic process
rhythmic process
negative regulation of inflammatory response
regulation of transcription involved in cell fate commitment
triglyceride homeostasis
cellular response to interleukin-1
cellular response to tumor necrosis factor
cellular response to hypoxia
T-helper 17 cell differentiation
regulation of cholesterol homeostasis

Function(s)

RNA polymerase II regulatory region sequence-specific DNA binding
core promoter sequence-specific DNA binding
transcription corepressor binding
transcription coactivator binding
DNA binding
transcription factor activity, sequence-specific DNA binding
steroid hormone receptor activity
RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding
protein binding
beta-catenin binding
transcription factor binding
oxysterol binding
zinc ion binding
sequence-specific DNA binding
metal ion binding
transcription factor activity, direct ligand regulated sequence-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0900006965.mm.1	NM_013646.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0900006965.mm.1	TC0900000892.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0900006964.mm.1	NM_013646.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0900006964.mm.1	TC0900000892.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0900006962.mm.1	TC0900000892.mm.1	MTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	350432	-	-