Mm00447351_m1

• Gene Symbol: Sptlc1
• Gene Name: serine palmitoyltransferase, long chain base subunit 1
• Gene Aliases: AW552086, C77762, E030036H05, Lcb1
• Chromosome Location: Chr.13: 53332748 - 53377417 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sptlc1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_009269.2	NP_033295.2	12 - 13	1153		130
GenBank mRNA	AF003823.1	-	12 - 13	1157		130
	AK028713.1	-	12 - 13	1164		130
	AK043064.1	-	8 - 9	732		130
	AK053207.1	-	12 - 13	1158		130
	AK079578.1	-	12 - 13	1154		130
	AK084391.1	-	12 - 13	1157		130
	AK084445.1	-	12 - 13	1150		130
	AK089030.1	-	12 - 13	1157		130
	AK161140.1	-	12 - 13	1190		130
	AK161811.1	-	8 - 9	732		130
	BC046323.1	-	12 - 13	1153	6391985	130
	BC068243.1	-		4011		130
	X95641.1	-	12 - 13	1152		130

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1300002017.mm.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Mus musculus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Sptlc1

Panther Classification:

Molecular Function -

transaminase

Gene Ontology Categories:

Process(es)

lipid metabolic process
sphingolipid metabolic process
sphingomyelin biosynthetic process
biosynthetic process
sphinganine biosynthetic process
sphingosine biosynthetic process
ceramide biosynthetic process

Function(s)

catalytic activity
serine C-palmitoyltransferase activity
protein binding
transferase activity
transferase activity, transferring acyl groups
pyridoxal phosphate binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR1300012599.mm.1	NM_009269.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1300012599.mm.1	NM_009269.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1300012599.mm.1	TC1300002017.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1300012600.mm.1	NM_009269.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1300012600.mm.1	NM_009269.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1300012600.mm.1	TC1300002017.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1300012598.mm.1	NM_009269.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1300012598.mm.1	NM_009269.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1300012598.mm.1	TC1300002017.mm.1	MTA TC