Mm00482896_g1

• Gene Symbol: Apobec1
• Gene Name: apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
• Gene Aliases: Cdar1
• Chromosome Location: Chr.6: 122577792 - 122603041 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Apobec1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001134391.1	NP_001127863.1	6 - 7	945		66
	NM_031159.3	NP_112436.1	6 - 7	1001		66
GenBank mRNA	AK146427.1	-	6 - 7	877		66
	AK151799.1	-	6 - 7	873		66
	AK165209.1	-	6 - 7	884		66
	U22262.1	-	6 - 7	1001		66
	U22263.1	-	6 - 7	945		66
	U22264.1	-	3 - 4	701		66

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0600003071.mm.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Detect Genomic DNA, Mus musculus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Apobec1

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Process(es)

mRNA processing
response to osmotic stress
cytidine deamination
response to gamma radiation
cytidine to uridine editing
mRNA modification
regulation of cell proliferation
lipoprotein metabolic process
lipoprotein biosynthetic process
response to drug
lipoprotein transport
response to ethanol
mRNA stabilization
response to calcium ion
defense response to virus
DNA cytosine deamination
DNA demethylation
negative regulation of methylation-dependent chromatin silencing

Function(s)

catalytic activity
GTP cyclohydrolase activity
cytidine deaminase activity
cytosine deaminase activity
protein binding
tRNA-specific adenosine deaminase activity
zinc ion binding
hydrolase activity
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
AU-rich element binding
N-cyclopropylmelamine deaminase activity
N-cyclopropylammeline deaminase activity
N-cyclopropylammelide alkylamino hydrolase activity
2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate deaminase activity
tRNA-specific adenosine-37 deaminase activity
archaeal-specific GTP cyclohydrolase activity
metal ion binding
tRNA-specific adenosine-34 deaminase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0600023783.mm.1	TC0600003071.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0600023783.mm.1	NM_001134391.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600023783.mm.1	NM_001134391.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600023783.mm.1	NM_031159.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600023783.mm.1	NM_031159.3	Refseq