Mm01149628_m1

• Gene Symbol: Smarcb1
• Gene Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1
• Gene Aliases: AU020204, Baf47, Ini1, SNF5/INI1, Snf5
• Chromosome Location: Chr.10: 75896769 - 75921614 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Smarcb1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001161853.1	NP_001155325.1	4 - 5	690		78
	NM_011418.2	NP_035548.1	4 - 5	717		78
GenBank mRNA	AB017343.1	-	4 - 5	498		78
	AB017344.1	-	4 - 5	471		78
	AB041578.1	-	4 - 5	672		78
	AJ011739.1	-	4 - 5	691		78
	AJ011740.1	-	4 - 5	691		78
	AK075906.1	-	4 - 5	700		78
	AK145552.1	-	4 - 5	679		78
	AK147638.1	-	1 - 2	5051		78
	AK147685.1	-	1 - 2	5051		78
	AK150169.1	-	4 - 5	691		78
	AK176985.1	-	1 - 2	36		78
	AK181638.1	-	1 - 2	36		78
	BC025163.1	-	4 - 5	671	3154501	78
	BC035269.1	-	2 - 3	2819		78

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1000002391.mm.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Mus musculus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Smarcb1

Panther Classification:

Molecular Function -

DNA metabolism protein

Gene Ontology Categories:

Process(es)

blastocyst development
blastocyst hatching
DNA repair
nucleosome disassembly
chromatin remodeling
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
cell cycle
nervous system development
negative regulation of cell proliferation
chromatin modification
cell differentiation
single stranded viral RNA replication via double stranded DNA intermediate
ATP-dependent chromatin remodeling
positive regulation by host of viral transcription
mitotic cell cycle phase transition
positive regulation of transcription from RNA polymerase II promoter
positive regulation of sequence-specific DNA binding transcription factor activity

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II distal enhancer sequence-specific DNA binding
p53 binding
transcription coactivator activity
protein binding
Tat protein binding
nucleosomal DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR1000017109.mm.1	NM_001161853.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000017109.mm.1	NM_001161853.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000017109.mm.1	NM_011418.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1000017109.mm.1	NM_011418.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1000017109.mm.1	TC1000002391.mm.1	MTA TC