Mm01173772_m1

• Gene Symbol: Rora
• Gene Name: RAR-related orphan receptor alpha
• Gene Aliases: 9530021D13Rik, Nr1f1, ROR1, ROR2, ROR3, nmf267, sg, staggerer, tmgc26
• Chromosome Location: Chr.9: 68653402 - 69388246 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Rora
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001289916.1	NP_001276845.1	6 - 7	1089		100
	NM_013646.2	NP_038674.1	7 - 8	1098		100
GenBank mRNA	AK043990.1	-	3 - 4	458		100
	AK149294.1	-	6 - 7	979		100
	AK155827.1	-	6 - 7	1040		100
	BC003757.1	-	6 - 7	1038	3592667	100
	S82720.1	-	6 - 7	1012		100
	U53228.1	-	7 - 8	1082		100
	Y08640.1	-	6 - 7			100
	Z82994.1	-	6 - 7	1077		100

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0900000892.mm.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Nuclear Receptor, Mammalian Gene Collection, Mus musculus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Rora

Panther Classification:

Molecular Function -

C4 zinc finger nuclear receptor

Gene Ontology Categories:

Process(es)

angiogenesis
transcription, DNA-templated
regulation of transcription, DNA-templated
xenobiotic metabolic process
nitric oxide biosynthetic process
regulation of smoothened signaling pathway
positive regulation of vascular endothelial growth factor production
regulation of glucose metabolic process
regulation of steroid metabolic process
cerebellar Purkinje cell differentiation
cerebellar granule cell precursor proliferation
intracellular receptor signaling pathway
circadian regulation of gene expression
cellular response to sterol
muscle cell differentiation
regulation of circadian rhythm
positive regulation of circadian rhythm
regulation of macrophage activation
negative regulation of I-kappaB kinase/NF-kappaB signaling
steroid hormone mediated signaling pathway
negative regulation of fat cell differentiation
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
cGMP metabolic process
rhythmic process
negative regulation of inflammatory response
regulation of transcription involved in cell fate commitment
triglyceride homeostasis
cellular response to interleukin-1
cellular response to tumor necrosis factor
cellular response to hypoxia
T-helper 17 cell differentiation
regulation of cholesterol homeostasis

Function(s)

RNA polymerase II regulatory region sequence-specific DNA binding
core promoter sequence-specific DNA binding
transcription corepressor binding
transcription coactivator binding
DNA binding
transcription factor activity, sequence-specific DNA binding
steroid hormone receptor activity
RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding
protein binding
beta-catenin binding
transcription factor binding
oxysterol binding
zinc ion binding
sequence-specific DNA binding
metal ion binding
transcription factor activity, direct ligand regulated sequence-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0900006970.mm.1	NM_013646.2	Refseq
Affymetrix Mouse Clariom S Array	PSR0900006970.mm.1	TC0900000892.mm.1	MTA TC