Mm01256268_m1 Best Coverage

• Gene Symbol: Trim9
• Gene Name: tripartite motif-containing 9
• Gene Aliases: -
• Chromosome Location: Chr.12: 70244533 - 70347761 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Trim9
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001110202.1	NP_001103672.1	2 - 3	1364		59
	NM_001110203.1	NP_001103673.1	2 - 3	1364		59
	NM_001286386.1	NP_001273315.1	2 - 3	1364		59
	NM_001286387.1	NP_001273316.1	2 - 3	1364		59
	NM_001286388.1	NP_001273317.1	2 - 3	1364		59
	NM_053167.3	NP_444397.2	2 - 3	1364		59
GenBank mRNA	AK028280.1	-	2 - 3	1083		59
	AK035807.1	-	2 - 3	1082		59
	AK048875.1	-	2 - 3	1101		59
	AK049907.1	-	2 - 3	1078		59
	AK129109.1	-	2 - 3	1069		59
	AK163123.1	-	2 - 3	1101		59
	BC052034.1	-	2 - 3	1364	5684877	59

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1200001886.mm.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Mus musculus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Trim9

Panther Classification:

Molecular Function -

ubiquitin-protein ligase

Gene Ontology Categories:

Process(es)

synaptic vesicle exocytosis
protein ubiquitination
negative regulation of SNARE complex assembly
proteasome-mediated ubiquitin-dependent protein catabolic process
negative regulation of calcium ion-dependent exocytosis

Function(s)

SNARE binding
ubiquitin-protein transferase activity
protein binding
zinc ion binding
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity
ligase activity
ribosomal S6-glutamic acid ligase activity
protein homodimerization activity
coenzyme F420-0 gamma-glutamyl ligase activity
coenzyme F420-2 alpha-glutamyl ligase activity
metal ion binding
protein-glycine ligase activity
protein-glycine ligase activity, initiating
protein-glycine ligase activity, elongating
tubulin-glycine ligase activity
protein-glutamic acid ligase activity
tubulin-glutamic acid ligase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR1200012965.mm.1	NM_001110202.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1200012965.mm.1	NM_001110202.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1200012965.mm.1	NM_001110203.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1200012965.mm.1	NM_001110203.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1200012965.mm.1	NM_001286386.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1200012965.mm.1	NM_001286387.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1200012965.mm.1	NM_001286388.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1200012965.mm.1	NM_053167.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1200012965.mm.1	NM_053167.3	Refseq
Affymetrix Mouse Clariom S Array	PSR1200012965.mm.1	TC1200001886.mm.1	MTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Mouse Genome Survey Microarray	825411	-	-