Mm01309565_m1 Best Coverage

• Gene Symbol: Col2a1
• Gene Name: collagen, type II, alpha 1
• Gene Aliases: Col2, Col2a, Col2a-1, Del1, Dmm, Lpk, M100856, Rgsc856
• Chromosome Location: Chr.15: 97975602 - 98004724 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Col2a1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001113515.2	NP_001106987.2	10 - 11	793		66
	NM_031163.3	NP_112440.2	11 - 12	997		66
GenBank mRNA	AK132311.1	-	10 - 11	716		66
	BC051383.1	-	10 - 11	704	6312433	66
	BC052326.1	-	10 - 11	683	6315379	66
	BC082331.1	-	11 - 12	930	30537724	66

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1500002162.mm.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Mus musculus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Col2a1

Panther Classification:

Molecular Function -

extracellular matrix structural protein

Gene Ontology Categories:

Process(es)

skeletal system development
cartilage condensation
tissue homeostasis
endochondral ossification
chondrocyte differentiation
heart morphogenesis
proteoglycan metabolic process
visual perception
sensory perception of sound
regulation of gene expression
collagen fibril organization
limb morphogenesis
inner ear morphogenesis
skeletal system morphogenesis
inner ear development
cartilage development
palate development
embryonic skeletal joint morphogenesis
bone development
cartilage development involved in endochondral bone morphogenesis
cellular response to BMP stimulus
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Function(s)

extracellular matrix structural constituent
identical protein binding
metal ion binding
platelet-derived growth factor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR1500017502.mm.1	NM_001113515.2.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1500017502.mm.1	NM_001113515.2	Refseq
Affymetrix Mouse Clariom S Array	PSR1500017502.mm.1	NM_031163.3.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1500017502.mm.1	NM_031163.3	Refseq
Affymetrix Mouse Clariom S Array	PSR1500017502.mm.1	TC1500002162.mm.1	MTA TC