Mm03003574_s1

• Gene Symbol: Sox9
• Gene Name: SRY (sex determining region Y)-box 9
• Gene Aliases: 2010306G03Rik, AV220920, mKIAA4243
• Chromosome Location: Chr.11: 112782210 - 112787757 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sox9
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_011448.4	NP_035578.3	1	592		96
GenBank mRNA	AF421878.1	-	1	217		96
	AK030187.1	-	1	577		96
	AK031516.1	-	1	576		96
	AK049986.1	-	1	578		96
	AK220197.1	-	1	562		96
	BC023796.1	-	1	579	5351850	96
	BC023808.1	-	1	580	5354229	96
	BC023953.1	-	1	589	5320371	96
	BC024958.1	-	1	569	4949782	96
	BC034264.1	-	1	520	4165469	96

More Information

Additional Information:

Based on assay re-evaluation, this assay may detect genomic DNA. Please contact Tech Support if you need more information.

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Mammalian Gene Collection, Detect Genomic DNA, Mus musculus, Inventoried, Both primers and probe map within a single exon

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Sox9

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
skeletal system development
cartilage condensation
cell fate specification
epithelial to mesenchymal transition
tissue homeostasis
positive regulation of protein phosphorylation
hair follicle development
positive regulation of mesenchymal cell proliferation
chondrocyte development
negative regulation of immune system process
heart valve development
heart valve morphogenesis
heart valve formation
endocardial cushion morphogenesis
chondrocyte differentiation involved in endochondral bone morphogenesis
chondrocyte hypertrophy
nucleosome assembly
chromatin remodeling
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
protein complex assembly
protein phosphorylation
cytoskeleton organization
signal transduction
epidermal growth factor receptor signaling pathway
Notch signaling pathway
spermatogenesis
heart development
positive regulation of cell proliferation
negative regulation of cell proliferation
male gonad development
regulation of cell cycle process
positive regulation of gene expression
negative regulation of gene expression
positive regulation of epithelial cell migration
neural crest cell development
positive regulation of phosphatidylinositol 3-kinase signaling
single organismal cell-cell adhesion
male germ-line sex determination
cAMP-mediated signaling
cell differentiation
regulation of cell adhesion
extracellular matrix organization
male sex determination
negative regulation of ossification
negative regulation of bone mineralization
negative regulation of epithelial cell differentiation
positive regulation of epithelial cell differentiation
otic vesicle formation
endocrine pancreas development
negative regulation of chondrocyte differentiation
positive regulation of chondrocyte differentiation
lacrimal gland development
protein localization to nucleus
somatic stem cell population maintenance
intrahepatic bile duct development
regulation of cell proliferation
negative regulation of apoptotic process
protein kinase B signaling
cell fate commitment
regulation of cell differentiation
negative regulation of myoblast differentiation
positive regulation of protein catabolic process
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
negative regulation of photoreceptor cell differentiation
oligodendrocyte differentiation
homeostasis of number of cells within a tissue
positive regulation of epithelial cell proliferation
negative regulation of epithelial cell proliferation
cartilage development
Sertoli cell differentiation
Sertoli cell development
astrocyte fate commitment
retina development in camera-type eye
retinal rod cell differentiation
endochondral bone morphogenesis
epithelial tube branching involved in lung morphogenesis
lung epithelial cell differentiation
prostate gland morphogenesis
epithelial cell proliferation involved in prostatic bud elongation
bronchus cartilage development
trachea cartilage development
intestinal epithelial structure maintenance
regulation of cell proliferation involved in tissue homeostasis
positive regulation of cartilage development
regulation of branching involved in lung morphogenesis
morphogenesis of a branching epithelium
lung smooth muscle development
negative regulation of biomineral tissue development
ERK1 and ERK2 cascade
Harderian gland development
cellular response to mechanical stimulus
cellular response to retinoic acid
cellular response to epidermal growth factor stimulus
cellular response to heparin
cellular response to transforming growth factor beta stimulus
renal vesicle induction
ureter development
ureter smooth muscle cell differentiation
ureter morphogenesis
metanephric nephron tubule formation
negative regulation of canonical Wnt signaling pathway
cochlea morphogenesis
positive regulation of kidney development
positive regulation of branching involved in ureteric bud morphogenesis
positive regulation of extracellular matrix assembly
positive regulation of male gonad development
positive regulation of cell proliferation involved in heart morphogenesis
positive regulation of mesenchymal stem cell differentiation
regulation of epithelial cell proliferation involved in lung morphogenesis
negative regulation of mesenchymal cell apoptotic process

Function(s)

transcription regulatory region sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
core promoter sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
enhancer sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
protein kinase activity
protein binding
beta-catenin binding
protein kinase A catalytic subunit binding
enhancer binding
bHLH transcription factor binding
sequence-specific DNA binding
transcription regulatory region DNA binding
protein heterodimerization activity
pre-mRNA intronic binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR1100017374.mm.1	NM_011448.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1100017374.mm.1	NM_011448.4	Refseq
Affymetrix Mouse Clariom S Array	PSR1100017374.mm.1	TC1100001853.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1100017375.mm.1	NM_011448.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1100017375.mm.1	NM_011448.4	Refseq
Affymetrix Mouse Clariom S Array	PSR1100017375.mm.1	TC1100001853.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1100017373.mm.1	NM_011448.4.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1100017373.mm.1	NM_011448.4	Refseq
Affymetrix Mouse Clariom S Array	PSR1100017373.mm.1	TC1100001853.mm.1	MTA TC