Mm04242331_s1

• Gene Symbol: Scarna3a
• Gene Name: small Cajal body-specific RNA 3A
• Gene Aliases: MBI-114
• Chromosome Location: Chr.1: 159340307 - 159340424 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Scarna3a
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_028518.1		1	55		92
GenBank mRNA	AF357404.1	-	1	55		92

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	CJ221771.1	-		343		Chr. - - [-] on Build	92
GenBankmRNA	CJ222108.1	-		322		Chr. - - [-] on Build	92
GenBankmRNA	CJ064173.1	-	1	78		Chr. 1 - 159340284 - 159340642 [+] on Build GRCm38	92
GenBankmRNA	CJ221847.1	-		332		Chr. - - [-] on Build	92

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	POU domain, class 5, transcription factor 1 pseudogene	Gm21053	Oct4, Pou5f1	-46.1kb	Sense	Chr. 1 - 159293805 - 159294189 on NCBI Build GRCm38
Downstream	tenascin R	Tnr	J1-tenascin, TN-R, janusin, restrictin	183.3kb	Sense	Chr. 1 - 159523741 - 159931729 on NCBI Build GRCm38

More Information

Additional Information:

Based on assay re-evaluation, this assay may detect genomic DNA. Please contact Tech Support if you need more information.

• Set Membership: Amplicon length between 86 and 100, 3' Most, Detect Genomic DNA, Mus musculus, Both primers and probe map within a single exon

Gene Ontology Categories:

Process(es)

biological_process

Function(s)

molecular_function

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0100011839.mm.1	NR_028518.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0100011839.mm.1	NR_028518.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0100011839.mm.1	NR_039543.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0100011839.mm.1	TC0100001446.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0100011838.mm.1	NR_028518.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0100011838.mm.1	NR_028518.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0100011838.mm.1	TC0100001446.mm.1	MTA TC