Mm04411625_m1

• Gene Symbol: Halr1
• Gene Name: Hoxa adjacent long noncoding RNA 1
• Gene Aliases: Gm15055, Haunt, Linchoxa1, OTTMUSG00000018881, linc-Evx1, linc-Hoxa1, linc1547
• Chromosome Location: Chr.6: 52102949 - 52113684 on Build GRCm38
• Species: Mouse
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Halr1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_110440.1		1 - 2	90		79
GenBank mRNA	AV457611.1	-	1 - 2	77		79

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	src family associated phosphoprotein 2	Skap2	2610021A10Rik, AA960083, BB137539, RA70, SKAP-HOM, Saps, Scap2, mSKAP55R	-90.4kb	Anti-sense	Chr. 6 - 51859165 - 52012549 on NCBI Build GRCm38
Downstream	homeobox A1	Hoxa1	ERA1, Hox-1.6	48.5kb	Anti-sense	Chr. 6 - 52155367 - 52160410 on NCBI Build GRCm38

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0600000615.mm.1

• Set Membership: Amplicon length between 71 and 85, Mus musculus, Probe spans exons

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
cellular response to retinoic acid

Function(s)

protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0600004691.mm.1	TC0600000615.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0600004691.mm.1	NR_110440.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600004690.mm.1	TC0600000615.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0600004690.mm.1	NR_110440.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600004693.mm.1	TC0600000615.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0600004693.mm.1	NR_110440.1	Refseq