Rn00563748_m1 Best Coverage

• Gene Symbol: Apobec1
• Gene Name: apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
• Gene Aliases: REPR
• Chromosome Location: Chr.4: 155386367 - 155414032 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Apobec1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_012907.2	NP_037039.1	1 - 2	505		64
	XM_006237290.2	XP_006237352.1	2 - 3	697		64
	XM_006237291.2	XP_006237353.1	2 - 3	753		64
	XM_006237292.2	XP_006237354.1	2 - 3	274		64
	XM_006237293.2	XP_006237355.1	2 - 3	429		64
	XM_008763219.1	XP_008761441.1	2 - 3	344		64
	XM_008763220.1	XP_008761442.1	2 - 3	213		64
GenBank mRNA	BC085335.1	-	1 - 2	505	7301703	64
	L07114.1	-	1 - 2	41		64

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0400003691.rn.1

Additional Information:

This assay is in the 5'UTR region of the BC085335.1,L07114.1,NM_012907.2,XM_006237290.2,XM_006237291.2,XM_006237292.2,XM_006237293.2,XM_008763220.1 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Apobec1

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Process(es)

mRNA processing
response to osmotic stress
cytidine deamination
response to zinc ion
response to gamma radiation
cytidine to uridine editing
mRNA modification
cellular response to insulin stimulus
regulation of cell proliferation
lipoprotein metabolic process
lipoprotein biosynthetic process
response to drug
lipoprotein transport
response to ethanol
cytidine metabolic process
mRNA stabilization
response to calcium ion
defense response to virus
DNA cytosine deamination
DNA demethylation
negative regulation of methylation-dependent chromatin silencing

Function(s)

RNA binding
cytidine deaminase activity
cytosine deaminase activity
protein binding
zinc ion binding
AU-rich element binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0400026089.rn.1	TC0400003691.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400026091.rn.1	TC0400003691.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400026090.rn.1	TC0400003691.rn.1	RTA TC