Rn00565403_m1 Best Coverage

• Gene Symbol: Apoa2
• Gene Name: apolipoprotein A-II
• Gene Aliases: APOAII, Apo-AII, ApoA-II
• Chromosome Location: Chr.13: 89596872 - 89598805 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Apoa2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_013112.1	NP_037244.1	2 - 3	188		64
	XM_006250238.2	XP_006250300.1	3 - 4	322		64
	XM_006250239.2	XP_006250301.1	3 - 4	328		64
GenBank mRNA	FQ209753.1	-	3 - 4	253		64
	FQ210458.1	-	3 - 4	250		64
	FQ210462.1	-	3 - 4	251		64
	FQ210537.1	-	2 - 3	247		64
	FQ210542.1	-	2 - 3	376		64
	FQ210648.1	-	3 - 4	250		64
	FQ210885.1	-	3 - 4	280		64
	FQ210979.1	-	3 - 4	253		64
	FQ211265.1	-	3 - 4	250		64
	FQ211383.1	-	3 - 4	252		64
	FQ218158.1	-	3 - 4	250		64
	FQ218273.1	-	3 - 4	253		64
	FQ218326.1	-	3 - 4	247		64
	FQ218756.1	-	3 - 4	254		64
	FQ221741.1	-	3 - 4	253		64
	FQ223965.1	-	3 - 4	247		64
	M28615.1	-	2 - 3	157		64
	X03468.1	-	2 - 3	188		64

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1300000753.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Transporter, 3' Most, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Apoa2

Panther Classification:

Molecular Function -

apolipoprotein

Gene Ontology Categories:

Process(es)

acute inflammatory response
negative regulation of cytokine secretion involved in immune response
protein folding
phosphatidylcholine biosynthetic process
lipid transport
cholesterol metabolic process
phospholipid catabolic process
response to glucose
positive regulation of cholesterol esterification
negative regulation of very-low-density lipoprotein particle remodeling
protein oxidation
peptidyl-methionine modification
regulation of intestinal cholesterol absorption
cholesterol transport
organ regeneration
regulation of protein stability
negative regulation of cholesterol transport
cholesterol efflux
phospholipid efflux
triglyceride-rich lipoprotein particle remodeling
low-density lipoprotein particle remodeling
high-density lipoprotein particle remodeling
high-density lipoprotein particle assembly
high-density lipoprotein particle clearance
lipoprotein metabolic process
response to drug
cholesterol homeostasis
positive regulation of catalytic activity
response to estrogen
reverse cholesterol transport
positive regulation of interleukin-8 biosynthetic process
diacylglycerol catabolic process
negative regulation of lipid catabolic process
positive regulation of lipid catabolic process
response to glucocorticoid
negative regulation of lipase activity
negative regulation of cholesterol import
negative regulation of cholesterol transporter activity

Function(s)

lipid transporter activity
phospholipid binding
high-density lipoprotein particle binding
lipid binding
cholesterol binding
cholesterol transporter activity
phosphatidylcholine binding
apolipoprotein receptor binding
protein homodimerization activity
protein heterodimerization activity
lipase inhibitor activity
phosphatidylcholine-sterol O-acyltransferase activator activity
high-density lipoprotein particle receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P11720	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	288141	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P11720	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P11720	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P11720	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P11720	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700608112	-	-
Agilent Rat cDNA Microarray (G4105A)	700608112	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10765531	-	-
Affymetrix Rat Gene 1.0 ST Array	10765533	-	-
Affymetrix Rat Gene 1.0 ST Array	10765532	-	-
Affymetrix Rat Gene 1.1 ST Array	10765530	-	-
Rat Genome 230 2.0 Array	1369727_PM_at	-	-
Rat Genome 230 2.0 Array	1369727_at	-	-
Affymetrix HT Rat Focus Array	1369727_PM_at	-	-
Affymetrix HT Rat Focus Array	1369727_at	-	-
Affymetrix Rat Clariom S Assay	PSR1300005213.rn.1	TC1300000753.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1300005215.rn.1	TC1300000753.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1300005214.rn.1	TC1300000753.rn.1	RTA TC
Rat Expression Set 230	1369727_at	-	-
Rat Expression Set 230	1369727_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10765530	-	-
Rat Genome U34 Set	X03468_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	20990552	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1358319	-	-
RatRef-12 Expression BeadChip	ILMN_66262	-	-