Rn00566329_m1 Best Coverage

• Gene Symbol: Ankrd1
• Gene Name: ankyrin repeat domain 1
• Gene Aliases: Alrp, Carp, Crap, MARP
• Chromosome Location: Chr.1: 254726985 - 254745683 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ankrd1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_013220.1	NP_037352.1	8 - 9	906		62
	XM_008760363.1	XP_008758585.1	9 - 10	966		62
GenBank mRNA	BC072699.1	-	8 - 9	898	7105899	62
	L81174.1	-	8 - 9	856		62
	U50736.1	-	8 - 9	906		62

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100007619.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ankrd1

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
regulation of transcription from RNA polymerase II promoter
positive regulation of neuron projection development
cellular response to drug
skeletal muscle cell differentiation
response to muscle stretch
muscle cell differentiation
positive regulation of apoptotic process
positive regulation of DNA damage response, signal transduction by p53 class mediator
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
positive regulation of protein secretion
cardiac muscle tissue morphogenesis
cellular response to lipopolysaccharide
cellular response to mechanical stimulus
cellular response to interleukin-1
cellular response to tumor necrosis factor
cellular response to organic cyclic compound
cellular response to hypoxia
cellular response to transforming growth factor beta stimulus
negative regulation of nucleic acid-templated transcription
negative regulation of DNA biosynthetic process

Function(s)

RNA polymerase II transcription factor binding
RNA polymerase II transcription coactivator activity
p53 binding
DNA binding
transcription cofactor activity
transcription corepressor activity
transcription factor binding
titin binding
histone deacetylase binding
R-SMAD binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P284753	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	544857	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	723194	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	947519	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	820013	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	924245	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	276518	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	111941	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P284753	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P284753	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P284753	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P284753	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	96816	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10729842	-	-
Affymetrix Rat Gene 1.0 ST Array	10729836	-	-
Affymetrix Rat Gene 1.0 ST Array	10729835	-	-
Affymetrix Rat Gene 1.0 ST Array	10729838	-	-
Affymetrix Rat Gene 1.0 ST Array	10729839	-	-
Affymetrix Rat Gene 1.0 ST Array	10729841	-	-
Affymetrix Rat Gene 1.0 ST Array	10729837	-	-
Affymetrix Rat Gene 1.0 ST Array	10729843	-	-
Affymetrix Rat Gene 1.0 ST Array	10729840	-	-
Affymetrix Rat Gene 1.0 ST Array	10729844	-	-
Affymetrix Rat Gene 1.1 ST Array	10729834	-	-
Rat Genome 230 2.0 Array	1367665_at	-	-
Rat Genome 230 2.0 Array	1391753_PM_at	-	-
Rat Genome 230 2.0 Array	1367664_at	-	-
Rat Genome 230 2.0 Array	1391753_at	-	-
Rat Genome 230 2.0 Array	1367665_PM_at	-	-
Rat Genome 230 2.0 Array	1367664_PM_at	-	-
Rat Genome 230 2.0 Array	1394747_at	-	-
Rat Genome 230 2.0 Array	1394747_PM_at	-	-
Affymetrix HT Rat Focus Array	1394747_PM_at	-	-
Affymetrix HT Rat Focus Array	1367664_at	-	-
Affymetrix HT Rat Focus Array	1367664_PM_at	-	-
Affymetrix HT Rat Focus Array	1394747_at	-	-
Affymetrix HT Rat Focus Array	1367665_PM_at	-	-
Affymetrix HT Rat Focus Array	1367665_at	-	-
Affymetrix Rat Clariom S Assay	PSR0100061141.rn.1	TC0100007619.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100061142.rn.1	TC0100007619.rn.1	RTA TC
Rat Expression Set 230	1367665_at	-	-
Rat Expression Set 230	1367665_PM_at	-	-
Rat Expression Set 230	1367664_PM_at	-	-
Rat Expression Set 230	1367664_at	-	-
Rat Expression Set 230	1394747_at	-	-
Rat Expression Set 230	1394747_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10729834	-	-
Rat Genome U34 Set	U50736_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	20824132	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1360661	-	-
RatRef-12 Expression BeadChip	ILMN_58079	-	-