Rn00569873_m1 Best Coverage

• Gene Symbol: Gata6
• Gene Name: GATA binding protein 6
• Gene Aliases: -
• Chromosome Location: Chr.18: 2416871 - 2446338 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Gata6
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_019185.1	NP_062058.1	4 - 5	1182		95
GenBank mRNA	L22760.1	-	4 - 5	1182		95

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1800000033.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Gata6

Panther Classification:

Molecular Function -

DNA-binding transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
in utero embryonic development
liver development
outflow tract septum morphogenesis
type B pancreatic cell differentiation
pancreatic A cell differentiation
transcription, DNA-templated
transcription from RNA polymerase II promoter
phospholipid metabolic process
endodermal cell fate determination
male gonad development
response to toxic substance
regulation of gene expression
cardiac muscle hypertrophy in response to stress
positive regulation of BMP signaling pathway
epithelial cell differentiation
pancreas development
negative regulation of transforming growth factor beta1 production
negative regulation of transforming growth factor beta2 production
tube morphogenesis
endodermal cell differentiation
odontogenesis of dentin-containing tooth
response to drug
positive regulation of apoptotic process
negative regulation of apoptotic process
response to estrogen
positive regulation of angiogenesis
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
organ formation
cardiac muscle tissue development
smooth muscle cell differentiation
response to cAMP
positive regulation of cardioblast differentiation
cardiac muscle cell differentiation
positive regulation of cardiac muscle cell proliferation
lung saccule development
Clara cell differentiation
Type II pneumocyte differentiation
intestinal epithelial cell differentiation
cardiac vascular smooth muscle cell differentiation
response to growth factor
positive regulation of cell cycle arrest
cellular response to gonadotropin stimulus
cellular response to hypoxia
cellular response to BMP stimulus

Function(s)

RNA polymerase II core promoter sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
RNA polymerase II repressing transcription factor binding
enhancer sequence-specific DNA binding
DNA binding
chromatin binding
double-stranded DNA binding
transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
transcription factor binding
zinc ion binding
protein kinase binding
sequence-specific DNA binding
transcription regulatory region DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P415349	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	580633	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	651750	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	368447	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	154256	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	719007	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	400596	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	368597	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	231344	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	959603	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	527004	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	683878	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	508826	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	70826	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	588720	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	54823	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	213641	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	129105	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	540190	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	837212	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	249594	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	313493	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	963373	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	433964	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	164683	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	132052	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	9024	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	180456	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P415349	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P415349	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P415349	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P415349	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P868714	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P445300	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P415354	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	2691	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	27245	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10800167	-	-
Affymetrix Rat Gene 1.0 ST Array	10800172	-	-
Affymetrix Rat Gene 1.0 ST Array	10800170	-	-
Affymetrix Rat Gene 1.0 ST Array	10800171	-	-
Affymetrix Rat Gene 1.0 ST Array	10800168	-	-
Affymetrix Rat Gene 1.0 ST Array	10800169	-	-
Affymetrix Rat Gene 1.1 ST Array	10800166	-	-
Rat Genome 230 2.0 Array	1375613_PM_at	-	-
Rat Genome 230 2.0 Array	1375613_at	-	-
Rat Genome 230 2.0 Array	1374335_at	-	-
Rat Genome 230 2.0 Array	1374335_PM_at	-	-
Rat Genome 230 2.0 Array	1368828_at	-	-
Rat Genome 230 2.0 Array	1368827_PM_at	-	-
Rat Genome 230 2.0 Array	1368827_at	-	-
Rat Genome 230 2.0 Array	1368828_PM_at	-	-
Affymetrix HT Rat Focus Array	1368828_PM_at	-	-
Affymetrix HT Rat Focus Array	1375613_PM_at	-	-
Affymetrix HT Rat Focus Array	1368827_at	-	-
Affymetrix HT Rat Focus Array	1368827_PM_at	-	-
Affymetrix HT Rat Focus Array	1368828_at	-	-
Affymetrix HT Rat Focus Array	1375613_at	-	-
Affymetrix Rat Clariom S Assay	PSR1800000267.rn.1	TC1800000033.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1800000268.rn.1	TC1800000033.rn.1	RTA TC
Rat Expression Set 230	1368828_at	-	-
Rat Expression Set 230	1368828_PM_at	-	-
Rat Expression Set 230	1374335_at	-	-
Rat Expression Set 230	1375613_PM_at	-	-
Rat Expression Set 230	1374335_PM_at	-	-
Rat Expression Set 230	1368827_PM_at	-	-
Rat Expression Set 230	1368827_at	-	-
Rat Expression Set 230	1375613_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10800166	-	-
Rat Genome U34 Set	rc_AA955182_at	-	-
Rat Genome U34 Set	rc_AA955182_g_at	-	-
Rat Genome U34 Set	rc_AA800786_at	-	-
Rat Genome U34 Set	L22760_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	20725560	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1363338	-	-
RatRef-12 Expression BeadChip	ILMN_66463	-	-