Rn00571425_m1 Best Coverage

• Gene Symbol: Scaf1
• Gene Name: SR-related CTD-associated factor 1
• Gene Aliases: Sr-a1
• Chromosome Location: Chr.1: 100997724 - 101011563 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Scaf1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_019384.1	NP_062257.1	3 - 4	326		86
	XM_008759409.1	XP_008757631.1	6 - 7	1289		86
	XM_008759410.1	XP_008757632.1	6 - 7	2366		86
	XM_008759411.1	XP_008757633.1	6 - 7	1236		86
GenBank mRNA	U49056.1	-	3 - 4	326		86

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100005369.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Scaf1

Panther Classification:

Molecular Function -

RNA metabolism protein, RNA processing factor, RNA splicing factor, nucleic acid metabolism protein

Gene Ontology Categories:

Process(es)

transcription from RNA polymerase II promoter
mRNA processing
RNA splicing

Function(s)

RNA binding
protein domain specific binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P102326	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	923311	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	35372	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	224964	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	265909	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	642845	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	48352	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	214017	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	514974	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	36079	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	80563	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P102326	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P102326	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P102326	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P12049	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	701914676	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	702151471	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	99770	-	-
Agilent Rat cDNA Microarray (G4105A)	702151471	-	-
Agilent Rat cDNA Microarray (G4105A)	701293128	-	-
Agilent Rat cDNA Microarray (G4105A)	701914676	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10721613	-	-
Affymetrix Rat Gene 1.0 ST Array	10721612	-	-
Affymetrix Rat Gene 1.0 ST Array	10721607	-	-
Affymetrix Rat Gene 1.0 ST Array	10721608	-	-
Affymetrix Rat Gene 1.0 ST Array	10721610	-	-
Affymetrix Rat Gene 1.0 ST Array	10721609	-	-
Affymetrix Rat Gene 1.0 ST Array	10721614	-	-
Affymetrix Rat Gene 1.0 ST Array	10721611	-	-
Affymetrix Rat Gene 1.1 ST Array	10721606	-	-
Rat Genome 230 2.0 Array	1367984_at	-	-
Rat Genome 230 2.0 Array	1367984_PM_at	-	-
Affymetrix HT Rat Focus Array	1367984_at	-	-
Affymetrix HT Rat Focus Array	1367984_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0100043583.rn.1	TC0100005369.rn.1	RTA TC
Rat Expression Set 230	1367984_PM_at	-	-
Rat Expression Set 230	1367984_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10721606	-	-
Rat Genome U34 Set	U49056_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21434201	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1351179	-	-
RatRef-12 Expression BeadChip	ILMN_69734	-	-