Rn00572139_m1 Best Coverage

• Gene Symbol: Hand1
• Gene Name: heart and neural crest derivatives expressed 1
• Gene Aliases: eHand
• Chromosome Location: Chr.10: 43250729 - 43253296 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Hand1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_021592.2	NP_067603.1	1 - 2	757		93
GenBank mRNA	BC097324.1	-	1 - 2	757	7460879	93
	Y08140.1	-	1 - 2	556		93

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000002855.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Hand1

Panther Classification:

Molecular Function -

basic helix-loop-helix transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
angiogenesis
in utero embryonic development
mesoderm formation
blastocyst development
trophectodermal cell differentiation
heart looping
embryonic heart tube formation
cardiac left ventricle formation
cardiac right ventricle formation
transcription from RNA polymerase II promoter
heart development
biological_process
cell differentiation
embryonic heart tube development
odontogenesis of dentin-containing tooth
negative regulation of sequence-specific DNA binding transcription factor activity
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
ventricular cardiac muscle tissue morphogenesis
cardiac septum morphogenesis
mesenchyme development
cartilage morphogenesis
trophoblast giant cell differentiation
determination of heart left/right asymmetry
negative regulation of RNA polymerase II regulatory region sequence-specific DNA binding

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
molecular_function
DNA binding
transcription coactivator activity
transcription factor binding
enzyme binding
identical protein binding
protein homodimerization activity
bHLH transcription factor binding
sequence-specific DNA binding
transcription regulatory region DNA binding
protein heterodimerization activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P574345	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P130064	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	258991	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	174960	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	178747	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P130064	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P130064	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P130064	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P574345	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P12083	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	18559	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	99329	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10719363	-	-
Affymetrix Rat Gene 1.0 ST Array	10719362	-	-
Affymetrix Rat Gene 1.0 ST Array	10719359	-	-
Affymetrix Rat Gene 1.0 ST Array	10719360	-	-
Affymetrix Rat Gene 1.0 ST Array	10742865	-	-
Affymetrix Rat Gene 1.0 ST Array	10742864	-	-
Affymetrix Rat Gene 1.0 ST Array	10719361	-	-
Affymetrix Rat Gene 1.1 ST Array	10719358	-	-
Affymetrix Rat Gene 1.1 ST Array	10742863	-	-
Rat Genome 230 2.0 Array	1377709_PM_at	-	-
Rat Genome 230 2.0 Array	1370128_at	-	-
Rat Genome 230 2.0 Array	1370128_PM_at	-	-
Rat Genome 230 2.0 Array	1377709_at	-	-
Rat Genome 230 2.0 Array	1375301_at	-	-
Rat Genome 230 2.0 Array	1375301_PM_at	-	-
Affymetrix HT Rat Focus Array	1370128_PM_at	-	-
Affymetrix HT Rat Focus Array	1370128_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000025030.rn.1	TC1000002855.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000025029.rn.1	TC1000002855.rn.1	RTA TC
Rat Expression Set 230	1370128_at	-	-
Rat Expression Set 230	1375301_at	-	-
Rat Expression Set 230	1370128_PM_at	-	-
Rat Expression Set 230	1375301_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10742863	-	-
Affymetrix Rat Gene 1.0 ST Array	10719358	-	-
Rat Genome U34 Set	Y08140_at	-	-
Rat Genome U34 Set	rc_AA923857_at	-	-
Rat Genome U34 Set	rc_AI231143_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21403091	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_2040572	-	-
RatRef-12 Expression BeadChip	ILMN_55813	-	-