Rn00575896_g1 Best Coverage

• Gene Symbol: RT1-M3-1
• Gene Name: RT1 class Ib, locus M3, gene 1
• Gene Aliases: 4B2/3.7, H2-M3, RT1-M3, RanoM3, RanoM301, RanoM302
• Chromosome Location: Chr.20: 1814661 - 1818811 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: RT1-M3-1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_022921.2	NP_075210.2	1 - 2	100		68
	XM_008772688.1	XP_008770910.1	1 - 2	111		68
	XM_008772689.1	XP_008770911.1	1 - 2	111		68
GenBank mRNA	AJ249342.1	-	1 - 2	99		68
	U16025.1	-	1 - 2	73		68

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC2000000978.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene RT1-M3-1

Panther Classification:

Molecular Function -

major histocompatibility complex protein

Gene Ontology Categories:

Process(es)

positive regulation of T cell mediated cytotoxicity
response to molecule of bacterial origin
alpha-beta T cell activation involved in immune response
antigen processing and presentation of peptide antigen via MHC class I
antigen processing and presentation of endogenous peptide antigen via MHC class Ib
antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent
positive regulation of interferon-gamma production
defense response to bacterium
positive regulation of nitric oxide biosynthetic process
positive regulation of natural killer cell mediated cytotoxicity

Function(s)

receptor binding
peptide antigen binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P075948	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	871275	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	457453	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	301509	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P075948	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P075948	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P075948	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P12333	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	79055	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10830845	-	-
Affymetrix Rat Gene 1.0 ST Array	10830847	-	-
Affymetrix Rat Gene 1.0 ST Array	10830844	-	-
Affymetrix Rat Gene 1.0 ST Array	10830842	-	-
Affymetrix Rat Gene 1.0 ST Array	10830846	-	-
Affymetrix Rat Gene 1.0 ST Array	10830848	-	-
Affymetrix Rat Gene 1.0 ST Array	10830843	-	-
Affymetrix Rat Gene 1.1 ST Array	10830841	-	-
Rat Genome 230 2.0 Array	1387205_PM_at	-	-
Rat Genome 230 2.0 Array	1387205_at	-	-
Affymetrix HT Rat Focus Array	1387205_PM_at	-	-
Affymetrix HT Rat Focus Array	1387205_at	-	-
Affymetrix Rat Clariom S Assay	PSR2000007723.rn.1	TC2000000978.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000007725.rn.1	TC2000000978.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000007724.rn.1	TC2000000978.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000007722.rn.1	TC2000000978.rn.1	RTA TC
Rat Expression Set 230	1387205_PM_at	-	-
Rat Expression Set 230	1387205_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10830841	-	-
Rat Genome U34 Set	U16025_g_at	-	-
Rat Genome U34 Set	U16025_at	-	-
Rat Genome U34 Set	rc_AA851242_g_at	-	-
Rat Genome U34 Set	rc_AA851242_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22239803	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1360773	-	-
RatRef-12 Expression BeadChip	ILMN_67379	-	-