Rn00580109_m1 Best Coverage

• Gene Symbol: Cdh1
• Gene Name: cadherin 1
• Gene Aliases: -
• Chromosome Location: Chr.19: 38768467 - 38838395 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cdh1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_031334.1	NP_112624.1	3 - 4	526		105
GenBank mRNA	AB017696.1	-	3 - 4	526		105

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1900000526.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Recommended Assay, Rattus norvegicus, Rat Wnt Panel, Rat Tumor Metastasis Panel, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cdh1

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

in utero embryonic development
trophectodermal cell differentiation
epithelial cell morphogenesis
homophilic cell adhesion via plasma membrane adhesion molecules
synapse assembly
sensory perception of sound
response to toxic substance
response to organic substance
single organismal cell-cell adhesion
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
protein metabolic process
pituitary gland development
negative regulation of cell-cell adhesion
neuron projection development
regulation of protein localization
regulation of water loss via skin
adherens junction organization
response to drug
positive regulation of transcription factor import into nucleus
regulation of cysteine-type endopeptidase activity involved in apoptotic process
positive regulation of transcription, DNA-templated
negative regulation of epithelial cell proliferation
protein homooligomerization
intestinal epithelial cell development
salivary gland cavitation
regulation of branching involved in salivary gland morphogenesis
bicellular tight junction assembly
cellular response to amino acid stimulus
cellular response to lithium ion
cellular response to indole-3-methanol
protein localization to plasma membrane
establishment of protein localization to plasma membrane
negative regulation of canonical Wnt signaling pathway
cochlea development
regulation of protein localization to cell surface
regulation of neuron migration

Function(s)

glycoprotein binding
calcium ion binding
protein binding
beta-catenin binding
protein phosphatase binding
protein domain specific binding
ankyrin binding
GTPase activating protein binding
gamma-catenin binding
cell adhesion molecule binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P142242	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	253601	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	315531	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	838678	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	895172	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	742458	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	703944	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	767733	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	203762	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	723060	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	557561	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	650509	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	519217	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	508653	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	572207	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	808655	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	161984	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	139625	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	241848	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	621275	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	547249	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	523507	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	274020	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	506824	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	601354	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	587489	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	777895	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	766105	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	583175	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	398337	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	91953	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	147107	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	526160	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	561154	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	111769	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	103907	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	1170	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	781625	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	254380	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	410991	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	555718	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	166098	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	416272	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	359011	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	899884	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	470160	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	562813	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	910009	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	624319	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	700362	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	194159	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	96656	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	126524	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	125298	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	21161	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	134883	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	153136	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	67849	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	177379	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	68859	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P142242	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P142242	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P142242	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P142242	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700290082	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	29031	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	68411	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	101603	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	91583	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	45779	-	-
Agilent Rat cDNA Microarray (G4105A)	700290082	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10807559	-	-
Affymetrix Rat Gene 1.0 ST Array	10807555	-	-
Affymetrix Rat Gene 1.0 ST Array	10807557	-	-
Affymetrix Rat Gene 1.0 ST Array	10807546	-	-
Affymetrix Rat Gene 1.0 ST Array	10807549	-	-
Affymetrix Rat Gene 1.0 ST Array	10807556	-	-
Affymetrix Rat Gene 1.0 ST Array	10807545	-	-
Affymetrix Rat Gene 1.0 ST Array	10807553	-	-
Affymetrix Rat Gene 1.0 ST Array	10807558	-	-
Affymetrix Rat Gene 1.0 ST Array	10807543	-	-
Affymetrix Rat Gene 1.0 ST Array	10807547	-	-
Affymetrix Rat Gene 1.0 ST Array	10807548	-	-
Affymetrix Rat Gene 1.0 ST Array	10807551	-	-
Affymetrix Rat Gene 1.0 ST Array	10807544	-	-
Affymetrix Rat Gene 1.0 ST Array	10807554	-	-
Affymetrix Rat Gene 1.0 ST Array	10807550	-	-
Affymetrix Rat Gene 1.1 ST Array	10807542	-	-
Rat Genome 230 2.0 Array	1386446_PM_at	-	-
Rat Genome 230 2.0 Array	1386947_PM_at	-	-
Rat Genome 230 2.0 Array	1386446_at	-	-
Rat Genome 230 2.0 Array	1386947_at	-	-
Affymetrix HT Rat Focus Array	1386446_PM_at	-	-
Affymetrix HT Rat Focus Array	1386947_at	-	-
Affymetrix HT Rat Focus Array	1386947_PM_at	-	-
Affymetrix HT Rat Focus Array	1386446_at	-	-
Affymetrix Rat Clariom S Assay	PSR1900004584.rn.1	TC1900000526.rn.1	RTA TC
Rat Expression Set 230	1386947_at	-	-
Rat Expression Set 230	1386947_PM_at	-	-
Rat Expression Set 230	1386446_at	-	-
Rat Expression Set 230	1386446_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10807542	-	-
Rat Genome U34 Set	rc_AA946081_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21274732	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1371484	-	-
RatRef-12 Expression BeadChip	ILMN_70002	-	-