Rn00587206_m1 Best Coverage

• Gene Symbol: Usp2
• Gene Name: ubiquitin specific peptidase 2
• Gene Aliases: UBP-t
• Chromosome Location: Chr.8: 48403986 - 48432525 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Usp2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053774.2	NP_446226.2	3 - 4	990		72
	XM_006242861.2	XP_006242923.1	3 - 4	1151		72
	XM_006242863.2	XP_006242925.1	2 - 3	442		72
	XM_008766138.1	XP_008764360.1	2 - 3	291		72
	XM_008766139.1	XP_008764361.1	2 - 3	294		72
GenBank mRNA	AF106658.1	-	2 - 3	418		72
	AF106659.1	-	3 - 4	990		72
	AF202453.1	-	2 - 3	863		72
	AF202454.1	-	2 - 3	197		72
	BC085719.1	-	3 - 4	964	7193298	72

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0800000551.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Protease, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Usp2

Panther Classification:

Molecular Function -

cysteine protease

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
regulation of transcription, DNA-templated
muscle organ development
protein deubiquitination
circadian regulation of gene expression
entrainment of circadian clock by photoperiod
proteasome-mediated ubiquitin-dependent protein catabolic process
locomotor rhythm
positive regulation of mitotic cell cycle
circadian behavior
negative regulation of skeletal muscle tissue development
positive regulation of skeletal muscle tissue development
protein stabilization
regulation of proteasomal protein catabolic process

Function(s)

cysteine-type endopeptidase activity
thiol-dependent ubiquitin-specific protease activity
protein binding
cyclin binding
ubiquitin protein ligase binding
identical protein binding
metal ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0800003368.rn.1	TC0800000551.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800003377.rn.1	TC0800000551.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800003380.rn.1	TC0800000551.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800003374.rn.1	TC0800000551.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800003373.rn.1	TC0800000551.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800003379.rn.1	TC0800000551.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800003367.rn.1	TC0800000551.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800003378.rn.1	TC0800000551.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800003366.rn.1	TC0800000551.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800003375.rn.1	TC0800000551.rn.1	RTA TC