Rn00596529_m1 Best Coverage

• Gene Symbol: Prop1
• Gene Name: PROP paired-like homeobox 1
• Gene Aliases: -
• Chromosome Location: Chr.10: 36449920 - 36452381 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Prop1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_153627.1	NP_705891.1	1 - 2	116		73
	XM_008767664.1	XP_008765886.1	1 - 2	113		73
GenBank mRNA	AB037922.1	-	1 - 2	116		73

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000002733.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Prop1

Panther Classification:

Molecular Function -

homeodomain transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
blood vessel development
transcription from RNA polymerase II promoter
biological_process
organ morphogenesis
dorsal/ventral pattern formation
cell migration
hypothalamus cell differentiation
adenohypophysis development
negative regulation of apoptotic process
positive regulation of transcription from RNA polymerase II promoter
gland development
hypophysis morphogenesis
canonical Wnt signaling pathway
somatotropin secreting cell differentiation

Function(s)

RNA polymerase II distal enhancer sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding
transcriptional repressor activity, RNA polymerase II distal enhancer sequence-specific binding
molecular_function
chromatin binding
beta-catenin binding
protein C-terminus binding
sequence-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P056653	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	903218	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P056653	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P056653	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P056653	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P219596	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10742471	-	-
Affymetrix Rat Gene 1.0 ST Array	10742472	-	-
Affymetrix Rat Gene 1.0 ST Array	10742473	-	-
Affymetrix Rat Gene 1.1 ST Array	10742470	-	-
Affymetrix Rat Clariom S Assay	PSR1000024093.rn.1	TC1000002733.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000024094.rn.1	TC1000002733.rn.1	RTA TC
Affymetrix Rat Gene 1.0 ST Array	10742470	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22265081	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1352395	-	-
RatRef-12 Expression BeadChip	ILMN_51779	-	-