Rn00598571_m1 Best Coverage

• Gene Symbol: Myod1
• Gene Name: myogenic differentiation 1
• Gene Aliases: -
• Chromosome Location: Chr.1: 102396538 - 102399248 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Myod1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_176079.1	NP_788268.1	1 - 2	841		85
GenBank mRNA	BC127480.1	-	1 - 2	821	8366406	85

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100001523.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Myod1

Panther Classification:

Molecular Function -

basic helix-loop-helix transcription factor

Gene Ontology Categories:

Process(es)

regulation of alternative mRNA splicing, via spliceosome
transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
muscle organ development
myoblast fate determination
skeletal muscle tissue development
myoblast fusion
cellular response to starvation
skeletal muscle atrophy
myotube differentiation
myotube cell development
myotube differentiation involved in skeletal muscle regeneration
skeletal muscle cell differentiation
response to muscle stretch
skeletal muscle tissue regeneration
positive regulation of skeletal muscle tissue regeneration
regulation of RNA splicing
skeletal muscle fiber adaptation
histone H3 acetylation
histone H4 acetylation
myoblast differentiation
positive regulation of myoblast differentiation
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
skeletal muscle fiber development
positive regulation of skeletal muscle fiber development
striated muscle cell differentiation
positive regulation of muscle cell differentiation
cellular response to glucocorticoid stimulus
cellular response to estradiol stimulus
cellular response to oxygen levels
positive regulation of myoblast fusion
negative regulation of myoblast proliferation

Function(s)

RNA polymerase II regulatory region sequence-specific DNA binding
RNA polymerase II core promoter proximal region sequence-specific DNA binding
core promoter binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
transcription factor binding
enzyme binding
chromatin DNA binding
ubiquitin protein ligase binding
nuclear hormone receptor binding
sequence-specific DNA binding
protein heterodimerization activity
protein dimerization activity
E-box binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0100012304.rn.1	TC0100001523.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100012305.rn.1	TC0100001523.rn.1	RTA TC