Rn00696332_m1 Best Coverage

• Gene Symbol: Picalm
• Gene Name: phosphatidylinositol binding clathrin assembly protein
• Gene Aliases: Calm
• Chromosome Location: Chr.1: 154377234 - 154458922 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Picalm
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053554.2	NP_446006.1	18 - 19	1829		83
	XM_006229669.2	XP_006229731.1	19 - 20	2159		83
	XM_006229670.2	XP_006229732.1	19 - 20	2144		83
	XM_006229671.2	XP_006229733.1	19 - 20	2139		83
	XM_006229672.2	XP_006229734.1	18 - 19	2135		83
	XM_006229673.2	XP_006229735.1	18 - 19	2120		83
	XM_006229674.2	XP_006229736.1	18 - 19	2114		83
	XM_006229675.2	XP_006229737.1	18 - 19	2099		83
	XM_006229676.2	XP_006229738.1	19 - 20	2158		83
	XM_006229677.2	XP_006229739.1	18 - 19	2134		83
	XM_006229678.2	XP_006229740.1	18 - 19	2119		83
	XM_006229679.2	XP_006229741.1	18 - 19	2008		83
	XM_006229680.2	XP_006229742.1	18 - 19	1993		83
	XM_006229681.2	XP_006229743.1	17 - 18	1984		83
	XM_006229682.2	XP_006229744.1	17 - 18	1969		83
	XM_006229683.2	XP_006229745.1	18 - 19	2008		83
	XM_006229684.2	XP_006229746.1	18 - 19	1993		83
	XM_006229685.2	XP_006229747.1	17 - 18	1969		83
GenBank mRNA	AF041373.1	-	17 - 18	1701		83
	AF041374.1	-	18 - 19	1830		83
	AY699717.1	-	17 - 18	1676		83
	AY706215.1	-	18 - 19	1715		83
	AY724477.1	-	17 - 18	1694		83
	BC100142.1	-	18 - 19	1890	7456159	83

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100001998.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Picalm

Panther Classification:

Molecular Function -

vesicle coat protein

Gene Ontology Categories:

Process(es)

receptor-mediated endocytosis
axonogenesis
cell proliferation
negative regulation of gene expression
synaptic vesicle maturation
vesicle-mediated transport
endosomal transport
hemopoiesis
regulation of endocytosis
receptor internalization
regulation of protein localization
cargo loading into vesicle
positive regulation of transcription, DNA-templated
negative regulation of receptor-mediated endocytosis
clathrin coat assembly
dendrite morphogenesis
regulation of protein transport
iron ion homeostasis
clathrin-mediated endocytosis
iron ion import into cell
positive regulation of neuron death
positive regulation of beta-amyloid formation
regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process
positive regulation of aspartic-type endopeptidase activity involved in amyloid precursor protein catabolic process
negative regulation of metalloendopeptidase activity involved in amyloid precursor protein catabolic process

Function(s)

protein binding
1-phosphatidylinositol binding
SH3 domain binding
clathrin binding
clathrin heavy chain binding
clathrin adaptor activity
identical protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0100015523.rn.1	TC0100001998.rn.1	RTA TC