Rn01159908_m1 Best Coverage

• Gene Symbol: LOC685179
• Gene Name: similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin c2
• Gene Aliases: -
• Chromosome Location: Chr.7: 2875902 - 2905463 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: LOC685179
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_001055673.5	XP_001055673.1	2 - 3	297		64
	XM_001055738.5	XP_001055738.1	2 - 3	297		64
	XM_001055795.5	XP_001055795.1	2 - 3	298		64
	XM_002729767.4	XP_002729813.2	2 - 3	298		64
	XM_006240805.2	XP_006240867.1	2 - 3	298		64
	XM_006240806.2	XP_006240868.1	2 - 3	298		64
	XM_006240807.2	XP_006240869.1	2 - 3	298		64
	XM_006240808.2	XP_006240870.1	2 - 3	298		64
	XM_008765050.1	XP_008763272.1	2 - 3	298		64
	XM_008765051.1	XP_008763273.1	2 - 3	1142		64

More Information

Additional Information:

This assay is in the 5'UTR region of the XM_008765051.1 transcripts.

• Set Membership: Amplicon length less than or equal to 70, Recommended Assay, Rattus norvegicus, Probe spans exons

Panther Classification:

Molecular Function -

chromatin/chromatin-binding, or -regulatory protein

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
nucleosome disassembly
chromatin remodeling
regulation of transcription from RNA polymerase II promoter
regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment
ATP-dependent chromatin remodeling
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II distal enhancer sequence-specific DNA binding
DNA binding
chromatin binding
protein binding
nucleosomal DNA binding