Rn01408621_g1 Best Coverage

• Gene Symbol: Mbd3
• Gene Name: methyl-CpG binding domain protein 3
• Gene Aliases: -
• Chromosome Location: Chr.7: 12179046 - 12186251 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Mbd3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001108735.1	NP_001102205.1	5 - 6	979		64
	XM_006240965.1	XP_006241027.1	5 - 6	973		64
	XM_006240966.1	XP_006241028.1	5 - 6	872		64
	XM_008765119.1	XP_008763341.1	6 - 7	851		64
	XM_008765120.1	XP_008763342.1	5 - 6	791		64
	XM_008765121.1	XP_008763343.1	6 - 7	775		64
	XM_008765122.1	XP_008763344.1	5 - 6	971		64
GenBank mRNA	BC167041.1	-	5 - 6	746		64
	FQ216718.1	-	4 - 5	487		64

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0700000202.rn.1

• Set Membership: Amplicon length less than or equal to 70, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, Probe spans exons

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
in utero embryonic development
methylation-dependent chromatin silencing
brain development
heart development
aging
tissue development
response to organic cyclic compound
histone acetylation
response to nutrient levels
response to estradiol
ATP-dependent chromatin remodeling
regulation of DNA methylation
embryonic organ development

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II distal enhancer sequence-specific DNA binding
molecular_function
DNA binding
chromatin binding
methyl-CpG binding
nucleosomal DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0700001820.rn.1	TC0700000202.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700001824.rn.1	TC0700000202.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700001823.rn.1	TC0700000202.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700001821.rn.1	TC0700000202.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700001822.rn.1	TC0700000202.rn.1	RTA TC