Rn01409279_m1 Best Coverage

• Gene Symbol: Pdcd6
• Gene Name: programmed cell death 6
• Gene Aliases: -
• Chromosome Location: Chr.1: 31576183 - 31591852 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Pdcd6
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001107452.1	NP_001100922.1	2 - 3	291		113
	XM_006227784.2	XP_006227846.1	2 - 3	280		113
GenBank mRNA	BC168744.1	-	2 - 3	248	6920123	113
	FQ213638.1	-	2 - 3	212		113
	FQ219953.1	-	2 - 3	212		113
	FQ219997.1	-	2 - 3	212		113
	FQ231349.1	-	2 - 3	212		113
	FQ231760.1	-	2 - 3	212		113
	FQ234686.1	-	2 - 3	212		113

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100000329.rn.1

• Set Membership: Amplicon length greater than or equal to 101, Apoptosis, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Panther Classification:

Molecular Function -

actin or actin-binding cytoskeletal protein

Gene Ontology Categories:

Process(es)

positive regulation of endothelial cell proliferation
proteolysis
intracellular protein transport
apoptotic process
activation of cysteine-type endopeptidase activity involved in apoptotic process
positive regulation of endothelial cell migration
negative regulation of vascular endothelial growth factor receptor signaling pathway
negative regulation of TOR signaling
cellular response to heat
vascular endothelial growth factor receptor-2 signaling pathway
positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
positive regulation of angiogenesis
response to calcium ion
negative regulation of protein kinase B signaling

Function(s)

calcium-dependent cysteine-type endopeptidase activity
calcium ion binding
protein homodimerization activity
protein anchor
protein dimerization activity
calcium-dependent protein binding
binding, bridging

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0100001875.rn.1	TC0100000329.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100001876.rn.1	TC0100000329.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100001877.rn.1	TC0100000329.rn.1	RTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21971417	-	-