Rn01413889_g1 Best Coverage

• Gene Symbol: Cxcl10
• Gene Name: chemokine (C-X-C motif) ligand 10
• Gene Aliases: IP-10, Scyb10
• Chromosome Location: Chr.14: 17210733 - 17212930 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cxcl10
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_139089.1	NP_620789.1	2 - 3	278		106
GenBank mRNA	BC058444.1	-	2 - 3	293	6918440	106
	FQ225217.1	-	2 - 3	292		106
	FQ225221.1	-	2 - 3	292		106
	FQ225582.1	-	2 - 3	289		106
	FQ225670.1	-	2 - 3	292		106
	FQ226479.1	-	2 - 3	289		106
	FQ231406.1	-	2 - 3	292		106
	FQ232883.1	-	2 - 3	292		106
	FQ233441.1	-	2 - 3	292		106
	FQ233623.1	-	2 - 3	292		106
	FQ233884.1	-	2 - 3	292		106
	U17035.1	-	2 - 3	278		106
	U22520.1	-	2 - 3	277		106

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1400000252.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cxcl10

Panther Classification:

Molecular Function -

chemokine

Gene Ontology Categories:

Process(es)

positive regulation of leukocyte chemotaxis
chemotaxis
inflammatory response
immune response
G-protein coupled receptor signaling pathway
positive regulation of cell proliferation
response to cold
response to virus
response to gamma radiation
T cell chemotaxis
response to auditory stimulus
negative regulation of angiogenesis
positive regulation of cell migration
positive regulation of cAMP metabolic process
response to lipopolysaccharide
response to vitamin D
cellular response to heat
regulation of cell proliferation
positive regulation of cAMP-mediated signaling
negative regulation of myoblast differentiation
positive regulation of release of sequestered calcium ion into cytosol
defense response to virus
chemokine-mediated signaling pathway
cellular response to lipopolysaccharide
negative regulation of myoblast fusion
positive regulation of T cell migration

Function(s)

cytokine activity
chemokine activity
heparin binding
CXCR3 chemokine receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P1039128	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P1039128	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P1039128	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P1039128	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P1039128	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	701591071	-	-
Agilent Rat cDNA Microarray (G4105A)	701591071	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10771658	-	-
Affymetrix Rat Gene 1.0 ST Array	10771656	-	-
Affymetrix Rat Gene 1.0 ST Array	10771659	-	-
Affymetrix Rat Gene 1.0 ST Array	10771657	-	-
Affymetrix Rat Gene 1.1 ST Array	10771655	-	-
Rat Genome 230 2.0 Array	1387969_PM_at	-	-
Rat Genome 230 2.0 Array	1387969_at	-	-
Affymetrix HT Rat Focus Array	1387969_at	-	-
Affymetrix HT Rat Focus Array	1387969_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1400001977.rn.1	TC1400000252.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400001978.rn.1	TC1400000252.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400001980.rn.1	TC1400000252.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400001979.rn.1	TC1400000252.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400001976.rn.1	TC1400000252.rn.1	RTA TC
Rat Expression Set 230	1387969_at	-	-
Rat Expression Set 230	1387969_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10771655	-	-
Rat Genome U34 Set	U17035_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21382174	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1364335	-	-
RatRef-12 Expression BeadChip	ILMN_59474	-	-