Rn01419048_m1 Best Coverage

• Gene Symbol: Hdac8
• Gene Name: histone deacetylase 8
• Gene Aliases: RGD1562895
• Chromosome Location: Chr.X: 72163777 - 72370059 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Hdac8
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001126373.2	NP_001119845.2	2 - 3	504		113
	XM_006257123.2	XP_006257185.1	2 - 3	512		113
	XM_006257124.2	XP_006257186.1	2 - 3	511		113
	XM_008773263.1	XP_008771485.1	2 - 3	509		113
GenBank mRNA	BC162023.1	-	2 - 3	497	9099275	113
	FM086081.1	-	2 - 3	503		113

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0X00001962.rn.1

• Set Membership: Amplicon length greater than or equal to 101, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Probe spans exons

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription, DNA-templated
sister chromatid cohesion
histone H3-K9 modification
histone H3 deacetylation
histone H4 deacetylation
regulation of cohesin loading

Function(s)

NAD-dependent histone deacetylase activity (H3-K14 specific)
metal ion binding
NAD-dependent histone deacetylase activity (H3-K9 specific)
NAD-dependent histone deacetylase activity (H4-K16 specific)
NAD-dependent histone deacetylase activity (H3-K18 specific)

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0X00012489.rn.1	TC0X00001962.rn.1	RTA TC