Rn01423584_g1 Best Coverage

• Gene Symbol: Cd40
• Gene Name: CD40 molecule, TNF receptor superfamily member 5
• Gene Aliases: Tnfrsf5
• Chromosome Location: Chr.3: 161519788 - 161534943 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cd40
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_134360.1	NP_599187.1	2 - 3	154		55
	XM_006235511.2	XP_006235573.1	2 - 3	216		55
	XM_008762463.1	XP_008760685.1	2 - 3	217		55
	XM_008762464.1	XP_008760686.1	2 - 3	215		55
	XM_008762465.1	XP_008760687.1	2 - 3	216		55
GenBank mRNA	AF241231.2	-	2 - 3	169		55
	BC097949.1	-	2 - 3	154	7387440	55
	FQ226992.1	-	2 - 3	137		55

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0300002314.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cd40

Panther Classification:

Molecular Function -

transmembrane signal receptor

Gene Ontology Categories:

Process(es)

positive regulation of protein phosphorylation
immune system process
immune response-regulating cell surface receptor signaling pathway
cellular calcium ion homeostasis
inflammatory response
positive regulation of B cell proliferation
positive regulation of interleukin-12 production
B cell activation
positive regulation of tyrosine phosphorylation of Stat1 protein
positive regulation of I-kappaB kinase/NF-kappaB signaling
positive regulation of MAP kinase activity
protein kinase B signaling
positive regulation of transcription from RNA polymerase II promoter
positive regulation of isotype switching to IgG isotypes
regulation of immune response
regulation of immunoglobulin secretion
positive regulation of NF-kappaB transcription factor activity
defense response to virus
cellular response to lipopolysaccharide
cellular response to mechanical stimulus
positive regulation of protein kinase C signaling
positive regulation of endothelial cell apoptotic process

Function(s)

antigen binding
protein binding
enzyme binding
ubiquitin protein ligase binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0300017328.rn.1	TC0300002314.rn.1	RTA TC