Rn01432371_m1 Best Coverage

• Gene Symbol: Ctcf
• Gene Name: CCCTC-binding factor (zinc finger protein)
• Gene Aliases: -
• Chromosome Location: Chr.19: 37600377 - 37649674 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ctcf
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_031824.1	NP_114012.1	8 - 9	1683		62
	XM_006255536.1	XP_006255598.1	7 - 8	1633		62
	XM_008772536.1	XP_008770758.1	6 - 7	1650		62
	XM_008772537.1	XP_008770759.1	6 - 7	1650		62
	XM_008772538.1	XP_008770760.1	6 - 7	1650		62
	XM_008772539.1	XP_008770761.1	6 - 7	1650		62
GenBank mRNA	AF133731.2	-	8 - 9	1719		62

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1900000485.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Recommended Assay, Rattus norvegicus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ctcf

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
DNA methylation
regulation of gene expression by genetic imprinting
transcription, DNA-templated
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
chromosome segregation
maintenance of DNA methylation
positive regulation of gene expression
negative regulation of gene expression
chromatin modification
nucleosome positioning
regulation of histone methylation
regulation of histone acetylation
regulation of gene expression, epigenetic
regulation of molecular function, epigenetic
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
chromatin insulator sequence binding
sequence-specific DNA binding
transcription regulatory region DNA binding
metal ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR1900004050.rn.1	TC1900000485.rn.1	RTA TC