Rn01433865_m1 Best Coverage

• Gene Symbol: Col13a1
• Gene Name: collagen, type XIII, alpha 1
• Gene Aliases: -
• Chromosome Location: Chr.20: 31456502 - 31598356 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Col13a1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001109172.1	NP_001102642.1	19 - 20	1487		56
	XM_006256470.2	XP_006256532.2	18 - 19	1478		56
	XM_006256479.2	XP_006256541.1	18 - 19	1486		56
	XM_006256481.2	XP_006256543.1	15 - 16	1356		56
	XM_008772904.1	XP_008771126.1	18 - 19	1487		56
	XM_008772905.1	XP_008771127.1	17 - 18	1460		56
	XM_008772906.1	XP_008771128.1	18 - 19	1487		56
	XM_008772907.1	XP_008771129.1	18 - 19	1487		56
	XM_008772908.1	XP_008771130.1	17 - 18	1451		56
	XM_008772909.1	XP_008771131.1	16 - 17	1424		56
	XM_008772910.1	XP_008771132.1	17 - 18	1421		56
	XM_008772911.1	XP_008771133.1	18 - 19	1488		56
	XM_008772912.1	XP_008771134.1	15 - 16	1373		56
GenBank mRNA	BC162018.1	-	15 - 16	1121	9098304	56

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC2000001551.rn.1

• Set Membership: Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Probe spans exons

Panther Classification:

Molecular Function -

extracellular matrix protein, extracellular matrix structural protein

Gene Ontology Categories:

Process(es)

morphogenesis of a branching structure
endochondral ossification
cell-matrix adhesion
single organismal cell-cell adhesion

Function(s)

heparin binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR2000012652.rn.1	TC2000001551.rn.1	RTA TC