Rn01435039_m1 Best Coverage

• Gene Symbol: Sema4d
• Gene Name: sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
• Gene Aliases: -
• Chromosome Location: Chr.17: 13516276 - 13538513 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sema4d
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001170563.1	NP_001164034.1	9 - 10	1627		62
GenBank mRNA	CO404183.1	-		283		62
	FQ211736.1	-		1844		62
	FQ212166.1	-		1965		62

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1700000227.rn.1

• Set Membership: Amplicon length less than or equal to 70, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Panther Classification:

Molecular Function -

membrane-bound signaling molecule, intercellular signal molecule

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
positive regulation of protein phosphorylation
negative regulation of cell adhesion
multicellular organism development
regulation of cell shape
negative regulation of alkaline phosphatase activity
positive regulation of phosphatidylinositol 3-kinase signaling
positive regulation of cell migration
regulation of cell projection organization
ossification involved in bone maturation
negative regulation of osteoblast differentiation
positive regulation of collateral sprouting
regulation of dendrite morphogenesis
positive regulation of peptidyl-tyrosine phosphorylation
negative regulation of peptidyl-tyrosine phosphorylation
positive regulation of axonogenesis
leukocyte aggregation
semaphorin-plexin signaling pathway
semaphorin-plexin signaling pathway involved in bone trabecula morphogenesis

Function(s)

receptor activity
transmembrane signaling receptor activity
receptor binding
semaphorin receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P132387	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P132387	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P132387	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P132387	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P702242	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.1 ST Array	10794242	-	-
Affymetrix HT Rat Focus Array	1391671_at	-	-
Affymetrix HT Rat Focus Array	1391671_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1700001835.rn.1	TC1700000227.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001844.rn.1	TC1700000227.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001846.rn.1	TC1700000227.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001825.rn.1	TC1700000227.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001837.rn.1	TC1700000227.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001824.rn.1	TC1700000227.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001842.rn.1	TC1700000227.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001843.rn.1	TC1700000227.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001834.rn.1	TC1700000227.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001838.rn.1	TC1700000227.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001832.rn.1	TC1700000227.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001839.rn.1	TC1700000227.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001833.rn.1	TC1700000227.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001841.rn.1	TC1700000227.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001845.rn.1	TC1700000227.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001836.rn.1	TC1700000227.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001831.rn.1	TC1700000227.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001840.rn.1	TC1700000227.rn.1	RTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21630630	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1353169	-	-
RatRef-12 Expression BeadChip	ILMN_56606	-	-