Rn01441738_m1 Best Coverage

• Gene Symbol: H2afy
• Gene Name: H2A histone family, member Y
• Gene Aliases: -
• Chromosome Location: Chr.17: 9282106 - 9344698 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: H2afy
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_017182.2	NP_058878.1	7 - 8	958		73
	XM_006253573.2	XP_006253635.1	7 - 8	996		73
	XM_006253574.2	XP_006253636.1	7 - 8	1086		73
	XM_006253575.2	XP_006253637.1	7 - 8	987		73
	XM_006253576.2	XP_006253638.1	7 - 8	984		73
	XM_006253577.2	XP_006253639.1	7 - 8	996		73
GenBank mRNA	BC089093.1	-	7 - 8	958	7126329	73
	M99065.2	-	6 - 7	799		73
	U79139.1	-	7 - 8	903		73

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1700000146.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene H2afy

Panther Classification:

Molecular Function -

histone

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
regulation of cell growth
nucleosome assembly
dosage compensation
biological_process
chromatin modification
negative regulation of histone phosphorylation
negative regulation of gene expression, epigenetic
regulation of chromatin silencing at rDNA
establishment of protein localization to chromatin
negative regulation of protein serine/threonine kinase activity
negative regulation of transcription of nuclear large rRNA transcript from RNA polymerase I promoter
negative regulation of cell cycle G2/M phase transition

Function(s)

rDNA binding
molecular_function
chromatin binding
double-stranded methylated DNA binding
protein kinase binding
protein serine/threonine kinase inhibitor activity
chromatin DNA binding
transcription regulatory region DNA binding
protein heterodimerization activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR1700001118.rn.1	TC1700000146.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001117.rn.1	TC1700000146.rn.1	RTA TC