Rn01460662_m1 Best Coverage

• Gene Symbol: Nr1d1
• Gene Name: nuclear receptor subfamily 1, group D, member 1
• Gene Aliases: REV-ERBAALPHA
• Chromosome Location: Chr.10: 86683875 - 86690815 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Nr1d1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001113422.1	NP_001106893.1	7 - 8	1852		64
	NM_145775.2	NP_665718.2	7 - 8	1822		64
GenBank mRNA	BC062047.1	-	7 - 8	1852	5598020	64

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000003722.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Nuclear Receptor, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Nr1d1

Panther Classification:

Molecular Function -

C4 zinc finger nuclear receptor, DNA-binding transcription factor, zinc finger transcription factor, gene-specific transcriptional regulator

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
glycogen biosynthetic process
transcription, DNA-templated
regulation of transcription, DNA-templated
circadian rhythm
proteasomal protein catabolic process
negative regulation of receptor biosynthetic process
regulation of lipid metabolic process
cell differentiation
circadian regulation of gene expression
negative regulation of toll-like receptor 4 signaling pathway
regulation of gluconeogenesis by regulation of transcription from RNA polymerase II promoter
regulation of circadian rhythm
steroid hormone mediated signaling pathway
response to leptin
regulation of fat cell differentiation
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
circadian temperature homeostasis
regulation of insulin secretion involved in cellular response to glucose stimulus
regulation of type B pancreatic cell proliferation
positive regulation of bile acid biosynthetic process
cellular response to lipopolysaccharide
regulation of cholesterol homeostasis
positive regulation of cholesterol homeostasis

Function(s)

RNA polymerase II regulatory region sequence-specific DNA binding
RNA polymerase II core promoter proximal region sequence-specific DNA binding
core promoter sequence-specific DNA binding
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcription corepressor binding
DNA binding
transcription factor activity, sequence-specific DNA binding
steroid hormone receptor activity
protein binding
zinc ion binding
heme binding
transcription regulatory region DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P175041	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	281716	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	634118	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	385279	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	34988	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	104406	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	130814	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P175041	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P175041	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P175041	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P175041	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	702153441	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	50191	-	-
Agilent Rat cDNA Microarray (G4105A)	702153441	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10746959	-	-
Affymetrix Rat Gene 1.0 ST Array	10746957	-	-
Affymetrix Rat Gene 1.0 ST Array	10746965	-	-
Affymetrix Rat Gene 1.0 ST Array	10746963	-	-
Affymetrix Rat Gene 1.0 ST Array	10746967	-	-
Affymetrix Rat Gene 1.0 ST Array	10746964	-	-
Affymetrix Rat Gene 1.0 ST Array	10746956	-	-
Affymetrix Rat Gene 1.0 ST Array	10746962	-	-
Affymetrix Rat Gene 1.0 ST Array	10746960	-	-
Affymetrix Rat Gene 1.0 ST Array	10746961	-	-
Affymetrix Rat Gene 1.0 ST Array	10746958	-	-
Affymetrix Rat Gene 1.0 ST Array	10746966	-	-
Affymetrix Rat Gene 1.1 ST Array	10746955	-	-
Affymetrix Rat Gene 1.1 ST Array	10738056	-	-
Rat Genome 230 2.0 Array	1370816_at	-	-
Rat Genome 230 2.0 Array	1370816_PM_at	-	-
Affymetrix HT Rat Focus Array	1370816_at	-	-
Affymetrix HT Rat Focus Array	1370816_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000033295.rn.1	TC1000003722.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000033294.rn.1	TC1000003722.rn.1	RTA TC
Rat Expression Set 230	1370816_at	-	-
Rat Expression Set 230	1370816_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10746955	-	-
Rat Genome U34 Set	M25804_at	-	-
Rat Genome U34 Set	M25804_g_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21557648	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1363753	-	-
RatRef-12 Expression BeadChip	ILMN_58528	-	-