Rn01473657_g1 Best Coverage

• Gene Symbol: Nfkbia
• Gene Name: nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha
• Gene Aliases: RL/IF-1
• Chromosome Location: Chr.6: 76267227 - 76270457 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Nfkbia
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001105720.2	NP_001099190.2	1 - 2	344		71
GenBank mRNA	BC166886.1	-	1 - 2	296	6890357	71
	CB316505.1	-	1 - 2	298		71
	FQ215246.1	-	1 - 2	296		71
	FQ225877.1	-	1 - 2	294		71
	FQ226288.1	-	1 - 2	294		71
	FQ227283.1	-	1 - 2	294		71
	FQ233200.1	-	1 - 2	294		71
	FQ233557.1	-	1 - 2	296		71
	FQ233627.1	-	1 - 2	282		71
	FQ234262.1	-	1 - 2	296		71
	X63594.1	-	1 - 2	274		71

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0600002478.rn.1

• Set Membership: Amplicon length between 71 and 85, Apoptosis, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Gene Ontology Categories:

Process(es)

protein import into nucleus, translocation
cytoplasmic sequestering of NF-kappaB
regulation of gene expression
negative regulation of macrophage derived foam cell differentiation
positive regulation of cholesterol efflux
negative regulation of lipid storage
lipopolysaccharide-mediated signaling pathway
negative regulation of NF-kappaB transcription factor activity
positive regulation of cellular protein metabolic process
response to muramyl dipeptide
response to lipopolysaccharide
toll-like receptor 4 signaling pathway
response to muscle stretch
regulation of cell proliferation
cytoplasmic sequestering of transcription factor
response to exogenous dsRNA
negative regulation of myeloid cell differentiation
negative regulation of Notch signaling pathway
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
nucleotide-binding oligomerization domain containing 1 signaling pathway
nucleotide-binding oligomerization domain containing 2 signaling pathway

Function(s)

nuclear localization sequence binding
enzyme binding
heat shock protein binding
ubiquitin protein ligase binding
protein complex binding
identical protein binding
NF-kappaB binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0600017689.rn.1	TC0600002478.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0600017686.rn.1	TC0600002478.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0600017685.rn.1	TC0600002478.rn.1	RTA TC