Rn01473658_g1

• Gene Symbol: Nfkbia
• Gene Name: nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha
• Gene Aliases: RL/IF-1
• Chromosome Location: Chr.6: 76267227 - 76270457 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Nfkbia
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001105720.2	NP_001099190.2	2 - 3	455		73
GenBank mRNA	BC166886.1	-	2 - 3	407	6890357	73
	CB316505.1	-	2 - 3	409		73
	FQ215246.1	-	2 - 3	407		73
	FQ225350.1	-	2 - 3	402		73
	FQ225877.1	-	2 - 3	405		73
	FQ226288.1	-	2 - 3	405		73
	FQ227283.1	-	2 - 3	405		73
	FQ233200.1	-	2 - 3	405		73
	FQ233627.1	-	2 - 3	393		73
	FQ234262.1	-	2 - 3	407		73
	X63594.1	-	2 - 3	385		73

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0600002478.rn.1

• Set Membership: Amplicon length between 71 and 85, Apoptosis, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Gene Ontology Categories:

Process(es)

protein import into nucleus, translocation
cytoplasmic sequestering of NF-kappaB
regulation of gene expression
negative regulation of macrophage derived foam cell differentiation
positive regulation of cholesterol efflux
negative regulation of lipid storage
lipopolysaccharide-mediated signaling pathway
negative regulation of NF-kappaB transcription factor activity
positive regulation of cellular protein metabolic process
response to muramyl dipeptide
response to lipopolysaccharide
toll-like receptor 4 signaling pathway
response to muscle stretch
regulation of cell proliferation
cytoplasmic sequestering of transcription factor
response to exogenous dsRNA
negative regulation of myeloid cell differentiation
negative regulation of Notch signaling pathway
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
nucleotide-binding oligomerization domain containing 1 signaling pathway
nucleotide-binding oligomerization domain containing 2 signaling pathway

Function(s)

nuclear localization sequence binding
enzyme binding
heat shock protein binding
ubiquitin protein ligase binding
protein complex binding
identical protein binding
NF-kappaB binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P261450	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	211591	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	393719	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	286634	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	126899	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P261450	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P261450	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P261450	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P261450	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P261444	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700286231	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700695171	-	-
Agilent Rat cDNA Microarray (G4105A)	700286231	-	-
Agilent Rat cDNA Microarray (G4105A)	700695171	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10890030	-	-
Affymetrix Rat Gene 1.0 ST Array	10890025	-	-
Affymetrix Rat Gene 1.0 ST Array	10890026	-	-
Affymetrix Rat Gene 1.0 ST Array	10890029	-	-
Affymetrix Rat Gene 1.0 ST Array	10890028	-	-
Affymetrix Rat Gene 1.0 ST Array	10890027	-	-
Affymetrix Rat Gene 1.1 ST Array	10890024	-	-
Rat Genome 230 2.0 Array	1389538_at	-	-
Rat Genome 230 2.0 Array	1389538_PM_at	-	-
Affymetrix HT Rat Focus Array	1389538_at	-	-
Affymetrix HT Rat Focus Array	1389538_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0600017684.rn.1	TC0600002478.rn.1	RTA TC
Rat Expression Set 230	1389538_at	-	-
Rat Expression Set 230	1389538_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10890024	-	-
Rat Genome U34 Set	X63594cds_at	-	-
Rat Genome U34 Set	X63594cds_g_at	-	-
Rat Genome U34 Set	rc_AA801189_at	-	-
Rat Genome U34 Set	rc_AI172447_at	-	-
Rat Genome U34 Set	X63594cds_at	-	-
Rat Genome U34 Set	X63594cds_g_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21214680	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1356628	-	-