Rn01480547_m1 Best Coverage

• Gene Symbol: Vps29
• Gene Name: vacuolar protein sorting 29 homolog (S. cerevisiae)
• Gene Aliases: -
• Chromosome Location: Chr.12: 39690069 - 39699127 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Vps29
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001105932.1	NP_001099402.1	3 - 4	509		69
	XM_006249362.2	XP_006249424.1	4 - 5	535		69
GenBank mRNA	AB578912.1	-	2 - 3	259		69
	BC167055.1	-	4 - 5	496	7302374	69
	FQ224287.1	-	4 - 5	517		69

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1200001595.rn.1

• Set Membership: Amplicon length less than or equal to 70, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Probe spans exons

Panther Classification:

Molecular Function -

membrane traffic protein, vesicle coat protein

Gene Ontology Categories:

Process(es)

intracellular protein transport
retrograde transport, endosome to Golgi
retrograde transport, endosome to plasma membrane

Function(s)

zinc ion binding
protein transporter activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P249902	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	435667	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	225603	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	249732	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	851957	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	23175	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	937513	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	65587	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P249902	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P249902	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P249902	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P249902	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10762043	-	-
Affymetrix Rat Gene 1.0 ST Array	10762041	-	-
Affymetrix Rat Gene 1.0 ST Array	10762042	-	-
Affymetrix Rat Gene 1.0 ST Array	10762040	-	-
Affymetrix Rat Gene 1.1 ST Array	10762039	-	-
Rat Genome 230 2.0 Array	1371639_PM_at	-	-
Rat Genome 230 2.0 Array	1371639_at	-	-
Affymetrix HT Rat Focus Array	1371639_PM_at	-	-
Affymetrix HT Rat Focus Array	1371639_at	-	-
Affymetrix Rat Clariom S Assay	PSR1200013588.rn.1	TC1200001595.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1200013592.rn.1	TC1200001595.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1200013593.rn.1	TC1200001595.rn.1	RTA TC
Rat Expression Set 230	1371639_PM_at	-	-
Rat Expression Set 230	1371639_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10762039	-	-
Rat Genome U34 Set	rc_AA893173_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	20809522	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1366950	-	-