Rn01514013_m1 Best Coverage

• Gene Symbol: Rtf1
• Gene Name: Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae)
• Gene Aliases: Gtl7
• Chromosome Location: Chr.3: 111478350 - 111537941 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Rtf1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001108958.1	NP_001102428.1	1 - 2	176		58
	XM_006234783.1	XP_006234845.1	1 - 2	208		58
GenBank mRNA	FQ231962.1	-	1 - 2	192		58
	FQ233654.1	-	1 - 2	192		58

More Information

Additional Information:

This assay is in the 5'UTR region of the NM_001108958.1 transcripts.

• Set Membership: Amplicon length less than or equal to 70, Recommended Assay, Rattus norvegicus, Probe spans exons

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
endodermal cell fate commitment
blastocyst growth
DNA-templated transcription, initiation
biological_process
stem cell population maintenance
positive regulation of transcription elongation from RNA polymerase II promoter
positive regulation of transcription from RNA polymerase II promoter
positive regulation of histone H3-K4 methylation
histone H3-K4 trimethylation

Function(s)

molecular_function
single-stranded DNA binding
poly(A) RNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0300010292.rn.1	TC0300001520.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300010293.rn.1	TC0300001520.rn.1	RTA TC