Rn01531981_g1 Best Coverage

• Gene Symbol: RT1-S3
• Gene Name: RT1 class Ib, locus S3
• Gene Aliases: H2-T23, RT-BM1, RT1-BM1, RTBM1
• Chromosome Location: Chr.20: 3176014 - 3180825 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: RT1-S3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001008886.2	NP_001008886.2	2 - 3	374		68
	XM_006255917.2	XP_006255979.1	2 - 3	484		68
GenBank mRNA	AF029241.1	-	2 - 3	299		68
	AJ243973.1	-	1 - 2	271		68
	AJ243975.1	-	1 - 2	271		68
	AJ243976.1	-	1 - 2	271		68
	CK599963.1	-	2 - 3	374		68
	FQ209394.1	-	2 - 3	363		68
	FQ232669.1	-	2 - 3	362		68
	X16979.1	-	1 - 2	94		68

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC2000000088.rn.1

• Set Membership: Amplicon length less than or equal to 70, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Panther Classification:

Molecular Function -

major histocompatibility complex protein

Gene Ontology Categories:

Process(es)

positive regulation of T cell mediated cytotoxicity
antigen processing and presentation of peptide antigen via MHC class I
antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent
immune response
inner ear development

Function(s)

receptor binding
peptide antigen binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR2000000483.rn.1	TC2000000088.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000000482.rn.1	TC2000000088.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000000484.rn.1	TC2000000088.rn.1	RTA TC