Rn01533587_g1 Best Coverage

• Gene Symbol: Rfx5
• Gene Name: regulatory factor X, 5 (influences HLA class II expression)
• Gene Aliases: -
• Chromosome Location: Chr.2: 196119055 - 196128109 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Rfx5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001107694.1	NP_001101164.1	4 - 5	270		61
	XM_006232876.2	XP_006232938.1	3 - 4	1768		61
	XM_006232878.2	XP_006232940.1	3 - 4	2077		61
	XM_008761300.1	XP_008759522.1	2 - 3	519		61
	XM_008761301.1	XP_008759523.1	3 - 4	2023		61

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0200001700.rn.1

• Set Membership: Amplicon length less than or equal to 70, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, Probe spans exons

Panther Classification:

Molecular Function -

winged helix/forkhead transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
regulation of transcription from RNA polymerase II promoter
biological_process

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
molecular_function
transcription factor activity, sequence-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0200011326.rn.1	TC0200001700.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0200011328.rn.1	TC0200001700.rn.1	RTA TC