Ercc6
Genomic Map
Back To TopAssay Details
| Gene Symbol: Ercc6 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_001107296.1 | NP_001100766.1 | 13 - 14 | 2420 | 66 | |
| XM_006252734.2 | XP_006252796.1 | 14 - 15 | 2806 | 66 | ||
| XM_006252735.2 | XP_006252797.1 | 14 - 15 | 2748 | 66 | ||
| XM_006252736.2 | XP_006252798.1 | 14 - 15 | 2955 | 66 | ||
| XM_006252737.2 | XP_006252799.1 | 13 - 14 | 2647 | 66 | ||
| XM_006252738.1 | XP_006252800.1 | 11 - 12 | 2113 | 66 | ||
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Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC1600000116.rn.1Set Membership: |
Amplicon length less than or equal to 70
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Gene Ontology Categories:
Function(s)
Process(es)
response to superoxide
DNA repair
transcription-coupled nucleotide-excision repair
base-excision repair
pyrimidine dimer repair
transcription elongation from RNA polymerase I promoter
cellular response to DNA damage stimulus
response to oxidative stress
activation of JNKK activity
activation of JUN kinase activity
biological_process
intrinsic apoptotic signaling pathway in response to DNA damage
response to UV
response to toxic substance
response to X-ray
response to UV-B
response to gamma radiation
regulation of DNA-templated transcription, elongation
positive regulation of DNA-templated transcription, elongation
multicellular organism growth
photoreceptor cell maintenance
positive regulation of protein tyrosine kinase activity
molecular_function
DNA binding
DNA helicase activity
chromatin binding
ATP binding
protein C-terminus binding
DNA-dependent ATPase activity
protein tyrosine kinase activator activity
protein complex binding
protein N-terminus binding
response to superoxide
DNA repair
transcription-coupled nucleotide-excision repair
base-excision repair
pyrimidine dimer repair
transcription elongation from RNA polymerase I promoter
cellular response to DNA damage stimulus
response to oxidative stress
activation of JNKK activity
activation of JUN kinase activity
biological_process
intrinsic apoptotic signaling pathway in response to DNA damage
response to UV
response to toxic substance
response to X-ray
response to UV-B
response to gamma radiation
regulation of DNA-templated transcription, elongation
positive regulation of DNA-templated transcription, elongation
multicellular organism growth
photoreceptor cell maintenance
positive regulation of protein tyrosine kinase activity
molecular_function
DNA binding
DNA helicase activity
chromatin binding
ATP binding
protein C-terminus binding
DNA-dependent ATPase activity
protein tyrosine kinase activator activity
protein complex binding
protein N-terminus binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P127634 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 605130 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 851199 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 732145 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 110044 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 890002 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 868015 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 243141 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 384282 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 182461 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 501302 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 766974 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 388204 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 206229 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 954253 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 565693 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 882738 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 75893 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 724059 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 217240 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 19380 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 87398 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 545723 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 80543 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 526121 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 395409 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 536331 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 145417 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 762994 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 774212 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 80456 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 973381 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 488582 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 795469 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 39357 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 436838 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 364870 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 658892 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 650496 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 215267 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 545624 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 175967 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 211875 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 126870 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 152543 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 514311 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 879960 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 770616 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 373828 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 912189 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 18319 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 66939 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 114490 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 18349 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 153863 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P127634 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P127634 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P127634 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P130849 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P1057602 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 30706 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10786800 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10786810 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10786805 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10786812 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10786814 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10786816 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10786813 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10786802 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10786806 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10786803 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10786807 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10786808 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10786815 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10786801 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10786799 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10786809 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10786811 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10786818 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10786798 | - | - |
| Rat Genome 230 2.0 Array | 1373097_at | - | - |
| Rat Genome 230 2.0 Array | 1373097_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1373097_at | - | - |
| Affymetrix HT Rat Focus Array | 1373097_PM_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR1600001343.rn.1 | TC1600000116.rn.1 | RTA TC |
| Rat Expression Set 230 | 1373097_PM_at | - | - |
| Rat Expression Set 230 | 1373097_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10786798 | - | - |
| Rat Genome U34 Set | rc_AI177685_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 22124820 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1372042 | - | - |
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