Rn01760597_g1

• Gene Symbol: Taf7
• Gene Name: TAF7 RNA polymerase II, TATA box binding protein (TBP)-associated factor
• Gene Aliases: -
• Chromosome Location: Chr.18: 30779149 - 30781297 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Taf7
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001107394.2	NP_001100864.1	1 - 2	229		71
GenBank mRNA	BC158715.1	-	1 - 2	229	9088638	71

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1800001288.rn.1

Additional Information:

This assay is in the 5'UTR region of the BC158715.1,NM_001107394.2 transcripts.

• Set Membership: Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, Probe spans exons

Panther Classification:

Molecular Function -

RNA metabolism protein, nucleic acid metabolism protein, general transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
DNA-templated transcription, initiation
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
transcription initiation from RNA polymerase II promoter
negative regulation of protein kinase activity
biological_process
intracellular estrogen receptor signaling pathway
negative regulation of histone acetylation
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter

Function(s)

molecular_function
transcription factor activity, sequence-specific DNA binding
transcription coactivator activity
transcription factor binding
histone acetyltransferase binding
vitamin D receptor binding
transcription regulatory region DNA binding
thyroid hormone receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P527556	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	321319	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P527556	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P527556	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P527556	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P527556	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10804016	-	-
Affymetrix Rat Gene 1.1 ST Array	10804015	-	-
Rat Genome 230 2.0 Array	1379735_at	-	-
Rat Genome 230 2.0 Array	1379735_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1800009187.rn.1	TC1800001288.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1800009189.rn.1	TC1800001288.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1800009188.rn.1	TC1800001288.rn.1	RTA TC
Affymetrix Rat Gene 1.0 ST Array	10804015	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1358227	-	-