Rn01764651_g1 Best Coverage

• Gene Symbol: Ccl21
• Gene Name: chemokine (C-C motif) ligand 21
• Gene Aliases: Ccl21b
• Chromosome Location: Chr.5: 58197678 - 58198782 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ccl21
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001008513.1	NP_001008513.1	3 - 4	408		74
GenBank mRNA	BC086571.1	-	3 - 4	408	7304213	74
	FQ218040.1	-	3 - 4	432		74
	FQ223815.1	-	3 - 4	434		74
	FQ225478.1	-	3 - 4	432		74
	FQ226079.1	-	3 - 4	430		74
	FQ233622.1	-	3 - 4	432		74

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0500002590.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, Rat Chemokine Panel, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ccl21

Panther Classification:

Molecular Function -

cytokine, intercellular signal molecule

Gene Ontology Categories:

Process(es)

establishment of T cell polarity
positive regulation of cell-matrix adhesion
dendritic cell chemotaxis
immune response
G-protein coupled receptor signaling pathway
positive regulation of actin filament polymerization
positive regulation of pseudopodium assembly
ruffle organization
positive regulation of cell adhesion mediated by integrin
response to prostaglandin E
mesangial cell-matrix adhesion
positive regulation of I-kappaB kinase/NF-kappaB signaling
positive regulation of phosphatidylinositol 3-kinase activity
positive regulation of protein kinase activity
positive regulation of JNK cascade
release of sequestered calcium ion into cytosol
positive regulation of filopodium assembly
positive regulation of protein kinase B signaling
cell chemotaxis
positive regulation of ERK1 and ERK2 cascade
positive regulation of neutrophil chemotaxis
negative regulation of leukocyte tethering or rolling
negative regulation of leukocyte apoptotic process
positive regulation of cell motility
positive regulation of T cell migration
positive regulation of myeloid dendritic cell chemotaxis

Function(s)

chemokine activity
chemokine receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P178252	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	317141	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P178252	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P178252	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P178252	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P178252	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10876212	-	-
Affymetrix Rat Gene 1.0 ST Array	10876209	-	-
Affymetrix Rat Gene 1.0 ST Array	10876211	-	-
Affymetrix Rat Gene 1.0 ST Array	10876210	-	-
Affymetrix Rat Gene 1.1 ST Array	10876208	-	-
Rat Genome 230 2.0 Array	1378015_PM_at	-	-
Rat Genome 230 2.0 Array	1378015_at	-	-
Affymetrix HT Rat Focus Array	1378015_at	-	-
Affymetrix HT Rat Focus Array	1378015_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0500019145.rn.1	TC0500002590.rn.1	RTA TC
Rat Expression Set 230	1378015_PM_at	-	-
Rat Expression Set 230	1378015_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10876208	-	-
Rat Genome U34 Set	rc_AA998168_at	-	-
Rat Genome U34 Set	rc_AI012482_f_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21918474	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1357180	-	-
RatRef-12 Expression BeadChip	ILMN_57800	-	-