Rn01764899_m1 Best Coverage

• Gene Symbol: Vapa
• Gene Name: VAMP (vesicle-associated membrane protein)-associated protein A
• Gene Aliases: -
• Chromosome Location: Chr.9: 113300831 - 113331872 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Vapa
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_031631.2	NP_113819.3	1 - 2	317		84
	XM_008767384.1	XP_008765606.1	1 - 2	870		84
GenBank mRNA	BC061875.1	-	1 - 2	317	5598274	84
	FQ228815.1	-	1 - 2	174		84
	FQ234023.1	-	1 - 2	74		84

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0900002589.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Vapa

Panther Classification:

Molecular Function -

membrane traffic protein, membrane trafficking regulatory protein

Gene Ontology Categories:

Process(es)

ER to Golgi vesicle-mediated transport
endoplasmic reticulum organization
signal transduction
cell death
neuron projection development
protein folding in endoplasmic reticulum
positive regulation of I-kappaB kinase/NF-kappaB signaling
positive regulation by host of viral release from host cell
negative regulation by host of viral genome replication
positive regulation by host of viral genome replication
protein localization to endoplasmic reticulum
COPII-coated vesicle budding

Function(s)

signal transducer activity
microtubule binding
protein domain specific binding
FFAT motif binding
protein heterodimerization activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0900021178.rn.1	TC0900002589.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0900021179.rn.1	TC0900002589.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0900021180.rn.1	TC0900002589.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0900021176.rn.1	TC0900002589.rn.1	RTA TC