Rn04341321_m1 Best Coverage

• Gene Symbol: Otx1
• Gene Name: orthodenticle homeobox 1
• Gene Aliases: OTX1X
• Chromosome Location: Chr.14: 106861556 - 106864933 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Otx1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_013109.2	NP_037241.1	1 - 2	143		72
GenBank mRNA	FQ212299.1	-		347		72
	L32602.1	-	1 - 2	144		72

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1400002344.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Otx1

Panther Classification:

Molecular Function -

homeodomain transcription factor

Gene Ontology Categories:

Process(es)

regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
multicellular organism development
anterior/posterior pattern specification
metencephalon development
forebrain development
midbrain development
inner ear morphogenesis
positive regulation of transcription from RNA polymerase II promoter
diencephalon morphogenesis

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcription factor activity, sequence-specific DNA binding
sequence-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P023788	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	125259	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	418308	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	155221	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P023788	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P023788	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P023788	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P496315	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	45032	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10778678	-	-
Affymetrix Rat Gene 1.0 ST Array	10778680	-	-
Affymetrix Rat Gene 1.0 ST Array	10778679	-	-
Affymetrix Rat Gene 1.0 ST Array	10778681	-	-
Affymetrix Rat Gene 1.0 ST Array	10778682	-	-
Affymetrix Rat Gene 1.1 ST Array	10778677	-	-
Rat Genome 230 2.0 Array	1387478_at	-	-
Rat Genome 230 2.0 Array	1387478_PM_at	-	-
Affymetrix HT Rat Focus Array	1387478_at	-	-
Affymetrix HT Rat Focus Array	1387478_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1400017357.rn.1	TC1400002344.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400017358.rn.1	TC1400002344.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400017359.rn.1	TC1400002344.rn.1	RTA TC
Rat Expression Set 230	1387478_at	-	-
Rat Expression Set 230	1387478_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10778677	-	-
Rat Genome U34 Set	S81924_s_at	-	-
Rat Genome U34 Set	L32602_at	-	-
Rat Genome U34 Set	rc_AI072009_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	20859901	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1362584	-	-
RatRef-12 Expression BeadChip	ILMN_59771	-	-