C__16191525_10

SNP ID:

rs2295963

Gene

PLPP6 SPATA6L

Gene Name

phospholipid phosphatase 6

spermatogenesis associated 6 like

Set Membership:

> HapMap

Chromosome Location:

Chr.9: 4664852 - 4664852 on Build GRCh38

Polymorphism:

A/G, Transition substitution

Context Sequence [VIC/FAM]:

CATGCCTCAAAATCAAATCATTTGC[A/G]TTCCCACAGCATCCTGAATACCGAC

Assay Details

Species:	Human
dbSNP Submissions:	NA
Phenotype:	MIM: 611666
Literature Links:	PLPP6 PubMed Links
Allele Nomenclature:
Minor Allele Frequency:

1000Genome	Applied Biosystems^®	HapMap
Global G (0.14) (0.86)	Caucasian - Not Available	CEPH (CEU) G (0.25) (0.75)
EAS G (0.06) (0.94)	African American - Not Available	YRI (Yoruba) G (0.17) (0.83)
SAS G (0.10) (0.90)	Chinese - Not Available	JPT (Japanese) G (0.12) (0.88)
AFR G (0.20) (0.80)	Japanese - Not Available	CHB (Han Chinese) G (0.10) (0.90)
EUR G (0.18) (0.82)
AMR G (0.17) (0.83)

PLPP6 - phospholipid phosphatase 6
Transcript Accession	SNP Location	SNP Type	Observed Codons	Observed Amino Acid	Protein ID
NM_203453.3	2559	UTR 3			NP_982278.3

SPATA6L - spermatogenesis associated 6 like
Transcript Accession	SNP Location	SNP Type	Observed Codons	Observed Amino Acid	Protein ID
NM_001039395.3	2559	Intron			NP_001034484.3
XM_006716795.2	2559	Intron			XP_006716858.1
XM_006716798.3	2559	Intron			XP_006716861.1
XM_006716799.3	2559	Intron			XP_006716862.1
XM_006716800.2	2559	Intron			XP_006716863.1
XM_006716801.2	2559	Intron			XP_006716864.1
XM_011517952.1	2559	Intron			XP_011516254.1
XM_011517954.1	2559	Intron			XP_011516256.1
XM_011517956.1	2559	Intron			XP_011516258.1
XM_011517957.1	2559	Intron			XP_011516259.1
XM_011517958.1	2559	Intron			XP_011516260.1
XM_017014881.1	2559	Intron			XP_016870370.1
XM_017014882.1	2559	Intron			XP_016870371.1
XM_017014883.1	2559	Intron			XP_016870372.1
XM_017014884.1	2559	Intron			XP_016870373.1
XM_017014885.1	2559	Intron			XP_016870374.1
XM_017014886.1	2559	Intron			XP_016870375.1
XM_017014887.1	2559	Intron			XP_016870376.1

More Information

• Set Membership: HapMap

Panther Classification:

Molecular Function -

phosphatase

Gene Ontology Categories:

Function(s)

hydrolase activity