Assay Details

Gene Symbol: COL21A1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001318751.1	NP_001305680.1	22 - 23	2327		109
	NM_001318752.1	NP_001305681.1	20 - 21	2208		109
	NM_001318753.1	NP_001305682.1	5 - 6	374		109
	NM_001318754.1	NP_001305683.1	5 - 6	374		109
	NM_030820.3	NP_110447.2	21 - 22	2253		109
	NR_134849.1		21 - 22	2245		109
	NR_134850.1		22 - 23	2270		109
	NR_134851.1		22 - 23	2278		109
	XM_006715223.1	XP_006715286.1	21 - 22	2419		109
	XM_011514924.2	XP_011513226.1	21 - 22	2196		109
	XM_011514925.2	XP_011513227.1	23 - 24	2366		109
	XM_011514926.1	XP_011513228.1	21 - 22	2124		109
	XM_011514927.1	XP_011513229.1	21 - 22	2078		109
GenBank mRNA	AF330693.1	-	20 - 21	2174		109
	AF370383.1	-	9 - 10	509		109
	AF414088.1	-	21 - 22			109
	AK096444.1	-	5 - 6	377		109
	AK126586.1	-	22 - 23	2138		109
	AK313398.1	-	21 - 22	2229		109
	AL136624.1	-	21 - 22			109
	BC045597.1	-	21 - 22	2200	4814199	109
	BC126108.1	-	21 - 22	2108	8991824	109
	BC143862.1	-	21 - 22	2100		109
	BC143863.1	-	22 - 23	2125		109
	BC143864.1	-	22 - 23	2133		109
	BC143865.1	-	22 - 23	2182	9052381	109
	DA826579.1	-	5 - 6	364		109

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0600012116.hg.1
This assay targets the same location as HTA transcript cluster(s) TC06001826.hg.1

Set Membership:

Ambion siRNA available

Amplicon length greater than or equal to 101

Mammalian Gene Collection

Homo sapiens

Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene COL21A1

Panther Classification:

Molecular Function -

extracellular matrix protein

extracellular matrix structural protein

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR06022068.hg.1	TC06001826.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR06022068.hg.1	ENST00000244728.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06022068.hg.1	ENST00000370808.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06022068.hg.1	ENST00000370811.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06022068.hg.1	ENST00000370819.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06022068.hg.1	ENST00000467045.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06022068.hg.1	ENST00000535941.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06022068.hg.1	NM_030820.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600183431.hg.1	ENST00000244728.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0600183431.hg.1	ENST00000370819.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600183431.hg.1	ENST00000461489.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600183431.hg.1	ENST00000467045.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600183431.hg.1	ENST00000488912.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600183431.hg.1	ENST00000535941.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600183431.hg.1	NM_030820.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600183431.hg.1	ENST00000244728.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0600183431.hg.1	ENST00000370819.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600183431.hg.1	ENST00000461489.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600183431.hg.1	ENST00000467045.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600183431.hg.1	ENST00000488912.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600183431.hg.1	ENST00000535941.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600183431.hg.1	NM_030820.3	Refseq
Affymetrix Human Clariom D Assay	PSR0600183431.hg.1	TC0600012116.hg.1	Clariom D TC

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Catalog #	4351372
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System Message

Genomic Map