Name: [Hs01677379_s1] [HAVCR1P1]
Creator: Thermo Fisher Scientific
Keywords: [HAVCR1P1] Assay, [hepatitis A virus cellular receptor 1 pseudogene 1] Assay

Assay Details

Gene Symbol: HAVCR1P1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_003603.1		1			81
GenBank mRNA	BX114328.1	-	1	185		81

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	DB352209.1	-	1		Chr. 19 - 24162752 - 24163295 [-] on Build GRCh38	81
GenBankmRNA	AA504564.1	-	1	171	Chr. 19 - 24162746 - 24163176 [+] on Build GRCh38	81
GenBankmRNA	AI248433.1	-	1		Chr. 19 - 24162553 - 24163009 [-] on Build GRCh38	81
GenBankmRNA	BF508952.1	-	1		Chr. 19 - 24162576 - 24163301 [-] on Build GRCh38	81
GenBankmRNA	BE670924.1	-	1		Chr. 19 - 24162773 - 24163301 [-] on Build GRCh38	81
GenBankmRNA	BE348845.1	-	1		Chr. 19 - 24162839 - 24163295 [-] on Build GRCh38	81

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	zinc finger protein 254	ZNF254	BMZF-5, HD-ZNF1, ZNF539, ZNF91L	-32.8kb	Sense	Chr. 19 - 24033405 - 24129968 on NCBI Build GRCh38
Downstream	endogenous retrovirus group K member 19 Pol protein	LOC105376906		3.4mb	Anti-sense	Chr. 19 - 27520104 - 27641535 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1900010234.hg.1
This assay targets the same location as HTA transcript cluster(s) TC19001374.hg.1

Set Membership:

Amplicon length between 71 and 85

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

MicroArray Probes:

Affymetrix

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Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR19019048.hg.1	NR_003603.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR19019048.hg.1	TC19001374.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1900184202.hg.1	ENST00000598671.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1900184202.hg.1	NR_003603.1	Refseq
Affymetrix Human Clariom D Assay	PSR1900184202.hg.1	TC1900010234.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1900184202.hg.1	ENST00000598671.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1900184202.hg.1	NR_003603.1	Refseq

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System Message

Genomic Map